Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2591g00005 ATGGCTCTGACACTTGAACGTGCTTTATTTTATCTACAAACCCTAGTAGTTATACTCTCAATATTCCTAGTCAACCCTTCCTTTTGTTTCAACCCCAAAAAGCTCTTTAACACTTCTTATTATGCTCCATCTGGTTCAGATTGGTCACCTTCACTGGCCACATGGTATGGACCTGCTAATGGAGATGGAAGTGAAGGTGGAGCCTGTGGTTATGGCAACGCTGTTGGGCAACCTCCATTCTCTTCGTTAATATCTGCAGGAAGCCCTCTCATTTATGACTCCGGCAAAGGGTGTGGTTCTTGTTACGAGGTGAAATGCACAGGGAATTCTGCATGCTCGGGCAACCCGGTGAAAGTAGTGATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTGGAGCAATGGCGGTTTCAGGTCAAGATCAGAATCTACGCAATGCAGGAAAAATAAACATTCAACATAGAAGAATCGAATGCAACTATCCTGGTAAATCAATAGCTTTTCGCGTGGACTCTGGGTCAAACCAAGAGTATTTTGCTACCTTGGTTGAATATGAGGATGGGGATGGTGACCTTGCCAAGGTTGAACTCAAAGAAGCACATGATGATTCAAATTCATGGGATTCAATGCAACAATCGTGGGGTGCGGTTTGGAAACTTGACAAAGGCTCACCATTGAAGGCACCATTCTCTATCAGGCTCACCACTCTTGAGTCTGGCAAGACCATCGTGGCCAATAATGTGATTCCTGCTCAGTGGACTCCTGGTCAGACTTACAGATCAATTGTGAATTTTGAAACTTAA 837 0.4432 MALTLERALFYLQTLVVILSIFLVNPSFCFNPKKLFNTSYYAPSGSDWSPSLATWYGPANGDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGSAFGAMAVSGQDQNLRNAGKINIQHRRIECNYPGKSIAFRVDSGSNQEYFATLVEYEDGDGDLAKVELKEAHDDSNSWDSMQQSWGAVWKLDKGSPLKAPFSIRLTTLESGKTIVANNVIPAQWTPGQTYRSIVNFET 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2591g00005 278 SUPERFAMILY PHL pollen allergen 175 272 IPR036749 -
Vium2591g00005 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Vium2591g00005 278 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Vium2591g00005 278 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Vium2591g00005 278 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vium2591g00005 278 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vium2591g00005 278 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vium2591g00005 278 SUPERFAMILY Barwin-like endoglucanases 36 174 IPR036908 -
Vium2591g00005 278 SMART dpbb_1 84 165 IPR007112 -
Vium2591g00005 278 PANTHER EXPANSIN-B3 23 276 - -
Vium2591g00005 278 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Vium2591g00005 278 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vium2591g00005 278 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Vium2591g00005 278 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Vium2591g00005 278 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Vium2591g00005 278 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vium2591g00005 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Vium2591g00005 278 Gene3D - 34 171 IPR036908 -
Vium2591g00005 278 Pfam Lytic transglycolase 85 164 IPR009009 -
Vium2591g00005 278 CDD DPBB_EXPB_N 48 170 - -
Vium2591g00005 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 272 IPR007117 -
Vium2591g00005 278 Gene3D - 172 277 IPR036749 -
Vium2591g00005 278 Pfam Expansin C-terminal domain 177 261 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2591g00005 Vium-Chr2591 78281 80057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2591g00005 25 276 Expansin Gene Family AT1G65680 62.302 1.20e-114 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2591g00005 - - gmx:100805408 525.398