Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2591g00003 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGCAGAGCCTTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCAAAGCCCGAAGAAGCGTCCCCGCGAACCATCCAACTCAGCTTCGAAGCCGAATCGGCTTCTTCCTCGTCTTCCTCATCCGATGATGACGAAGACGGTGACAAGGGTCTCTGTTATGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTCGTGGATCCCGAATTCTCTTTCGCAGCTGCAGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAGTCCGAGTCATCCAAGAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATGGAATAACAATAATAATAATAATATTAATTGCAGCAATTATTATTATTATAATGATCATAATAATGATACTAACAACTATACCACCCCCAGCATCAAGAAGCAAGTTTTCGGAACCGAACATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGATCACGAACCTGCGAGCTCGGTCTCCGAAGCAACTACCGAGGAAGACGTGGCGTTCTGTCTGATGCTGCTTTCCAGGGACAAATGGAAGCGACATAAGGACCAACCGCAATTCATGGATGTGGAAGATCAATACGAGGAGGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAAGACGAAGCATTCGAGGAGAGCGAGGAATCGCAAGAGACGATGAAACTTTGCAAGAACCGAGTACGAGGAAGGTACAAATGTGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCTTTGGGGGGCCACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAGTGGACGGTGAAGAAGCGGAAGTTGAGCACAGGAAGAAAAGTGGGACGTGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTTTGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGAGGACACAAGAGAACCCATGTTACTGGGTCAGCACCCTCAACAGTTCCATCAACTTCGGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTGCCGGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCGGAATTCGTCAAAACCCGATAG 1164 0.4948 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEAESASSSSSSSDDDEDGDKGLCYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNNINCSNYYYYNDHNNDTNNYTTPSIKKQVFGTEHEALMKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRHKDQPQFMDVEDQYEEEEEEEEEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKVDGEEAEVEHRKKSGTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPSTVPSTSAKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2591g00003 387 Coils Coil 215 248 - -
Vium2591g00003 387 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vium2591g00003 387 SMART c2h2final6 314 336 IPR013087 -
Vium2591g00003 387 SMART c2h2final6 4 26 IPR013087 -
Vium2591g00003 387 SMART c2h2final6 260 282 IPR013087 -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 32 72 - -
Vium2591g00003 387 Gene3D Classic Zinc Finger 257 336 - -
Vium2591g00003 387 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 368 387 - -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 212 250 - -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 99 115 - -
Vium2591g00003 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 314 341 IPR013087 -
Vium2591g00003 387 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 386 IPR044303 GO:0006355
Vium2591g00003 387 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Vium2591g00003 387 SUPERFAMILY beta-beta-alpha zinc fingers 259 336 IPR036236 -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 218 243 - -
Vium2591g00003 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vium2591g00003 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Vium2591g00003 387 ProSitePatterns Zinc finger C2H2 type domain signature. 316 336 IPR013087 -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 99 127 - -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 44 58 - -
Vium2591g00003 387 Pfam C2H2-type zinc finger 4 27 - -
Vium2591g00003 387 Pfam C2H2-type zinc finger 314 336 - -
Vium2591g00003 387 Pfam C2H2-type zinc finger 259 284 - -
Vium2591g00003 387 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2591g00003 Vium-Chr2591 42237 44437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2591g00003 1 373 C2H2 Transcription Factor Family AT3G60580 40.633 3.46e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2591g00003 zf-C2H2_6 3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2591g00003 - - vra:106780254 679.863