Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2588g00008 ATGAGAAACTCAATGTTCTGTCTTTCTATTCTGGTTCTATTCTTTTCTTTGTACACTCATCCTTCTCTTGCTGCACTCACCATCCTTTCTGCTGATAAAAAACTCATTGGTGATCAAACTCTCGTCTCCGAAGGTGGCGTCTTTGAACTGGGTTTCTTCAAGCCAGGTAATTCCTCTAACTACTATATAGGCATATGGTACAAAAAGGTCCCCACAAAAACAATAGTTTGGGTGGCAAATCGAGACAACCATGTCTCTCATAAGAACACTGCCACATTAACAATATCAGGTGGTAATTTGGTTCTCTTAGATGGGTCTTCTAATCAAGTTTGGTCAACAAACACGAGTTCTCCCAGGTCAGGTTCTGTCGTGGAAGCTGTTCTACTAGATTCCGGGAATCTCGTGTTAAGAGATAGACCTAATGATAATGCTTCGGAGCCTTTGTGGCAGAGTTTTGATCACCCCACGGACACGTTCCTTCCGGGTGGAAAAATTAAGCTCGACCATAAAACAAAGAAACCACAATACCTCACTTCGTGGAAGAACACGGAGGATCCTGCTACGGGTCTCTTCTCTCTGGAACTAGACCCTGAAGGCTCGACTGCTTATTTGATTACTCGGAACAAGACTGAACAGTATTGGACAAGTGGCCCTTGGAATGGACGCATTTTCAGTTTGGTTCCAGAGATGAGGTTGAATTATATCTTCAATTTCTCGTTTGTGTCGAACGAGAACGAGAGCTATTTCACCTACTCCTTGTATAACTCTTCCATTATATCTCGGTTATTGATAGATGTCACGGGACAGATCATGCAACTCACGTGGTTGGAGAATGCTCAGCAGTGGAACTTGTTTTGGACACAGCCGAGAGATAAATGTGACGTATATGCCGTTTGCGGTGCGTTTGGGAGTTGCACTGAGATGTCAATGATGGGGCCTTGTAATTGCTTGGAGGGTTTTGAGCCAAAGTCACAGTCTGATTGGAACCTGGAGGATTACTCAGGAGGGTGCCAGAGGAAAAAAAAGCTGCAATGCGAGAATTCCAATGCCTCCAACAGGGATAAGGACAGGTTCCTAGCAATTCCCAACGTCGTATTACCTAAAGATGCACAATCTGTGGGATTAGGGAATGCAGGAGAATGTGAATCAATTTGCTTGAGCATCTGCTCCTGCGCAGCTTATGCATATGACAGTAACGGGTGTTCAATTTGGGTCGGCAACCTTCTCAATGTGCAACAGTTGTCTTCTGATGATAGTAGCGGAGAAACTTTGCATCTCAAACTTGCAGCATCTGAGTTTCATGATGATAAAAGCAGCAAGACGACGATTATCGGTGTGGTTGTGGGAGTGGTTGTTGGCATTGGGATTCTCGTGGCCATCATTCTTTGGCGAAGGAAGAGAATGGTGGCATTAAGAAAGGCTGCGGAGGGTTCGTTGGTTGCATATGGATATAGAGATTTGCAAGATGCAACGAGGAATTTCTCTGAGAAATTGGGAGGAGGAGGGTTTGGTTCTGTTTTCAAAGGAACGTTGCATGACTCCAGTGTGGTAGCAGTGAAGAAGTTGGAAAGTTTTCGTCAAAGAGAGAAACAGTTCCAAACAGAAGTTCGGACAATAGGGACAATACAACATGTTAATCTTGTCAGGCTCCATGGATTCTGCTCTGAAGGCACCAAAAGGCTGCTAGTTTATGAATACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCAGAATAAGAACTTCGTGGTATTGGACTGGAAAACGAGATACCAAATTGCTTTGGGAATAGCAAGGGGATTGGCATACCTTCATGAGAAATGCAGAGACTGTATTATACACTGTGACGTAAAACCTGAGAACATTCTCCTAGATGCTGATTTTTGTCCCAAGATTGCAGACTTTGGCCTGGCTAAGCTTGTTGGAAGGGATTTCAGCAGGGTCCTCGCAACAATTAGAGGAACAAAAAGCTATCTTTCTCCAGAATGGATTTCTGGGGTGCCTATCACTGCCAAAGCCGACGTGTACAGCTATGGAATGATACTTTTTGAGCTTGTGTCAGGTAGGAGGAACTCTTATGAGCTATATGATTCTGAAGATGGCCAATTTAGGTTCTTTCCTACCAGGGTAGCAAACATAGTTGCCCGTGGTGGCAATGTTCTTAGCCTTTTGGATCCTTGTTTGGAACAAAATGCTGATGCCGAGGAGGTCACTCGAATGGCAACCGTTGCTTCCTGGTGCATCCAAGACAATGAGACTCACCGGCCAACCATGGGTCAGGTTGTTCATATCCTTGATGGGATCTTGGACGTGAATTTACCTCCAATTCCAACATTTCCTGAGGTATCTGTTCACTACTACTAG 2364 0.4437 MRNSMFCLSILVLFFSLYTHPSLAALTILSADKKLIGDQTLVSEGGVFELGFFKPGNSSNYYIGIWYKKVPTKTIVWVANRDNHVSHKNTATLTISGGNLVLLDGSSNQVWSTNTSSPRSGSVVEAVLLDSGNLVLRDRPNDNASEPLWQSFDHPTDTFLPGGKIKLDHKTKKPQYLTSWKNTEDPATGLFSLELDPEGSTAYLITRNKTEQYWTSGPWNGRIFSLVPEMRLNYIFNFSFVSNENESYFTYSLYNSSIISRLLIDVTGQIMQLTWLENAQQWNLFWTQPRDKCDVYAVCGAFGSCTEMSMMGPCNCLEGFEPKSQSDWNLEDYSGGCQRKKKLQCENSNASNRDKDRFLAIPNVVLPKDAQSVGLGNAGECESICLSICSCAAYAYDSNGCSIWVGNLLNVQQLSSDDSSGETLHLKLAASEFHDDKSSKTTIIGVVVGVVVGIGILVAIILWRRKRMVALRKAAEGSLVAYGYRDLQDATRNFSEKLGGGGFGSVFKGTLHDSSVVAVKKLESFRQREKQFQTEVRTIGTIQHVNLVRLHGFCSEGTKRLLVYEYMPNGSLDFHLFQNKNFVVLDWKTRYQIALGIARGLAYLHEKCRDCIIHCDVKPENILLDADFCPKIADFGLAKLVGRDFSRVLATIRGTKSYLSPEWISGVPITAKADVYSYGMILFELVSGRRNSYELYDSEDGQFRFFPTRVANIVARGGNVLSLLDPCLEQNADAEEVTRMATVASWCIQDNETHRPTMGQVVHILDGILDVNLPPIPTFPEVSVHYY 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2588g00008 787 Gene3D Phosphorylase Kinase; domain 1 458 566 - -
Vium2588g00008 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vium2588g00008 787 ProSiteProfiles Protein kinase domain profile. 492 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2588g00008 787 PIRSF SRK 1 785 IPR024171 GO:0004674
Vium2588g00008 787 ProSiteProfiles PAN/Apple domain profile. 345 429 IPR003609 -
Vium2588g00008 787 SMART ntp_6 353 428 IPR003609 -
Vium2588g00008 787 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Vium2588g00008 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 152 - -
Vium2588g00008 787 FunFam Receptor-like protein kinase 4 460 566 - -
Vium2588g00008 787 CDD B_lectin 35 155 IPR001480 -
Vium2588g00008 787 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Vium2588g00008 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 220 IPR036426 -
Vium2588g00008 787 Pfam Protein kinase domain 495 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2588g00008 787 ProSitePatterns Protein kinases ATP-binding region signature. 498 521 IPR017441 GO:0005524
Vium2588g00008 787 CDD PAN_AP_plant 342 429 - -
Vium2588g00008 787 SMART serkin_6 492 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2588g00008 787 Pfam PAN-like domain 353 411 IPR003609 -
Vium2588g00008 787 Gene3D Transferase(Phosphotransferase) domain 1 567 773 - -
Vium2588g00008 787 PANTHER OS07G0415500 PROTEIN 3 777 - -
Vium2588g00008 787 SMART blect_4 32 155 IPR001480 -
Vium2588g00008 787 Gene3D - 24 153 IPR036426 -
Vium2588g00008 787 CDD STKc_IRAK 498 768 - -
Vium2588g00008 787 FunFam Serine/threonine-protein kinase 567 773 - -
Vium2588g00008 787 SUPERFAMILY Protein kinase-like (PK-like) 480 779 IPR011009 -
Vium2588g00008 787 Pfam D-mannose binding lectin 74 181 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2588g00008 Vium-Chr2588 34808 37196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2588g00008 471 775 Receptor kinase-like Gene Family AT5G20050 44.025 2.30e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium2588g00008 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2588g00008 - - gmx:102667456 1191.02