Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2582g00003 ATGGCTCTTTCTCCTGAAACGTTCACAACCCGAAAACGACGACCAGCGTCGTCGTTTAACACATCCAAGCTGAGCGACCTTAACCTTCTCTTCTCTCTGCTTCAACTCACGGATCAGATATGTTCTTTAGACCTTAACAGCTCCGCCAACTTTCTCTTCAACCGCGCTTCATGTTCCGCCATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTCGAAGACATGATTAGGTCTTCCACCGTGAATCTCGATTCCGTTGTGGTTCCCCACTCCCTCTTCCTCTGCCTCGAAGAAATGTACATCGTTCTGCACAAAATCAAAACTTTGATAGAAGATTTCTCTAACGGAAGTAGGTTCAATTTGCTCATGCAAATCGAAATCGTCGCCGACACCTTCCATAGGCTCACCGGGGAACTCTCCACGCTCCTTGACGTCTTCCCTATCCAGGAACTCACCCTAAACGACGACGTTCGGGACCTCGTTCTCCTTGTCAGGAAACAGTGCTCCGAATCCAGGCCTGTCATCGGGACGGAACAGATTAACCTTCGGCGCGAGGTTGTTTCCGTCCTCGACCGGATCAAGAACGAGATCGTTCCTGATAAGGCGCATCTTTCGTCGATTTTCGAGAAACTGGAGATTCGTGACGCTTCGAGCTGCAGAGCGGAGATTGAGAACTTGGAAGAGGACATTCAAAACCGTAGCGAGGAGCAATCGAAGGCGGATCTCGTAGCGTTGATCGGCCTTGTTCGTTTCGCGAAGTGTGTTCTCTTCGGCGCATCAACGCCATCGACGAGGAGCGCCAGTCTGCGACGGAGTCGGTCGTCGGAGTTCGCAGTACCGGCGGATTACCGGTGTCCGATTAGCCTAGAGCTCATGCAAGATCCTGTCGTGGTGGCGACGGGACAGACGTACGATCGTGTATCTATCAAACTGTGGATGGATTCAGGACACAACACGTGTCCGAAAACGGGTCAAACTCTAGCACACACAGACCTAATCCCCAATCGCGTGCTGAGGAACATGATAACGACGTGGTGTCGCGAGCAGAAAATCCCCTTCGAAGTGGAAACAGTTACAGGTAAACTCAACGGCGGAGTAACCAACAAGGCCGCGTTGGAAGCCACGCGTATGACGGTGTCGTTTTTGGTGAACAAGCTGAAGGGAAACGACAACGCCCCTTTGTCTGTTGAAGATACTAACGGCACAGTTTACGAGCTTCGGGTTTTGGCAAAAACAGATTCAGATAGCCGAGCCTGTATTGCCGAGGCGGGGGCGATTCCGCTTTTGGTTCGGTTTCTCGATGTGGGAATGGAGAACCCGAGCCTACAGGTTAACGCCGTGACCACGATACTGAATTTGTCTATTCTGGAGGCGAACAAGACTAGGATAATGGAGACTGACGGCGCGTTAAACGGGATTGCTGAGGTTTTGCTGTCCGGTGTCACGTGGGAAGCGAAGGCCAACGCGGCGGCCACGGTGTTTAGTTTATCTGGTGTGCCCGCGCACAGGAAGAAGTTGGGTAGGAAAACACGTGTCGTTAGCGGTTTGGTGAATTTGGCGCGGGGTGGGCCCGAGGGGGCGAGGCGTGACGCGCTGGCGGCGATACTCAACCTCGCGGCGGACAGGGAGACGGTGGCGCGTCTGGTGGAGGGGGGCGCGATATCAATGGCTGCGGAGGTCATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCGGTGGTCAAGAGGGGTGGGTTGGTGGCTGTGGCGGCGGCGTACGCCGGGATTAAGCGGCTGGGGGCGGTTCTCAGGGAGGGGTCGGAGAGGGCGAGGGAGAGTGCGGCGGCGACGCTGGTCACCATGTGTCGGAAGGGGGGGTCGGAGGTTGTGGGTGAGCTGGCGGCGGTTCCCGGAGTGGAGAGGATAATTTGGGAACTCATGGCCGTGGGGAGTGTGAGGGGGCGACGGAAGGCGGCTACGCTGTTGAAGATTTTGCGGCGGTGGGCGGCGGGGCTGGATGGCGGAGAGAGTGAAGGGATGTCAACAACCACCATGATCACTCCCTCAACCACTACATTAGCACCGTAA 2070 0.5575 MALSPETFTTRKRRPASSFNTSKLSDLNLLFSLLQLTDQICSLDLNSSANFLFNRASCSAIRKTQLLGVVFEDMIRSSTVNLDSVVVPHSLFLCLEEMYIVLHKIKTLIEDFSNGSRFNLLMQIEIVADTFHRLTGELSTLLDVFPIQELTLNDDVRDLVLLVRKQCSESRPVIGTEQINLRREVVSVLDRIKNEIVPDKAHLSSIFEKLEIRDASSCRAEIENLEEDIQNRSEEQSKADLVALIGLVRFAKCVLFGASTPSTRSASLRRSRSSEFAVPADYRCPISLELMQDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQTLAHTDLIPNRVLRNMITTWCREQKIPFEVETVTGKLNGGVTNKAALEATRMTVSFLVNKLKGNDNAPLSVEDTNGTVYELRVLAKTDSDSRACIAEAGAIPLLVRFLDVGMENPSLQVNAVTTILNLSILEANKTRIMETDGALNGIAEVLLSGVTWEAKANAAATVFSLSGVPAHRKKLGRKTRVVSGLVNLARGGPEGARRDALAAILNLAADRETVARLVEGGAISMAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVGELAAVPGVERIIWELMAVGSVRGRRKAATLLKILRRWAAGLDGGESEGMSTTTMITPSTTTLAP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2582g00003 689 Gene3D - 366 585 IPR011989 -
Vium2582g00003 689 SMART arm_5 412 454 IPR000225 GO:0005515
Vium2582g00003 689 SMART arm_5 499 539 IPR000225 GO:0005515
Vium2582g00003 689 Pfam Armadillo/beta-catenin-like repeat 413 453 IPR000225 GO:0005515
Vium2582g00003 689 FunFam RING-type E3 ubiquitin transferase 274 351 - -
Vium2582g00003 689 FunFam RING-type E3 ubiquitin transferase 364 554 - -
Vium2582g00003 689 MobiDBLite consensus disorder prediction 670 689 - -
Vium2582g00003 689 SUPERFAMILY RING/U-box 268 351 - -
Vium2582g00003 689 Coils Coil 215 235 - -
Vium2582g00003 689 CDD RING-Ubox_PUB 279 331 IPR045210 -
Vium2582g00003 689 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Vium2582g00003 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 355 IPR013083 -
Vium2582g00003 689 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Vium2582g00003 689 SUPERFAMILY ARM repeat 394 659 IPR016024 -
Vium2582g00003 689 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Vium2582g00003 689 MobiDBLite consensus disorder prediction 671 689 - -
Vium2582g00003 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 467 IPR000225 GO:0005515
Vium2582g00003 689 PANTHER U BOX DOMAIN-CONTAINING 88 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2582g00003 Vium-Chr2582 40682 43541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2582g00003 11 683 U-box Gene Family AT5G01830 54.118 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2582g00003 - - gmx:100805405 1033.86