Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2582g00002 ATGGGGAATCACAGGTTTAGATTATCAGATATGATTCCGAATGCTTGGTTTTACAAGCTCAGGGATATGGGGAAGGGAAGAAAGCAAAACACCACACTCTCTGGGAAGAAGAAGCAAACTTCATCCATTTCAATCACTTCAACCACTTCAACCACACATTCATCAAAACCAAACCAACCCCTCCACCAATACAACAACAACAACAACCCCAGAAAGTCATACTACATCACAAGAGACCTCAAAACCTCACCCTCAAACACCCCGAAATTTTCCCCTCCCAGAAAATCAACCAAACAAAGAACCAAAAGAAGAGCTCCAAGAACCACAAAGTTTGTTTCCTCAGGTTGTAGCTGTCGCAGCACACTCGAATCCATGTGGACCAAATCAGATTCACCGCAGGAACACTCTTCCTCATCCCCATTTGACTCCTCACCCGAGTCAGAGTCCCCAGAATTCAGAACAGACCGTGTTCTCCCGTGTTCTTCATCGTTCGATGAAATGGTTTCCTTGTCAACCACCTCTTGCGCCTCTTGCAAGCTTAACACAAACAAAAACAACCCCCCCACCAACGACATCATCATCGACGTCGACAAAAACTCCATACCAAGAAAGGATAACAAGCTTGATGGCTACTACAGTTACAACAACAGCCGCAACAACGACTTTGATGACACCTTCTCAGAACTTGAGCTTCCTCCGATCATAACCAAGCCACCCAAATTGTTAAAGAAGAGAGAACTCAAACAAGGGTCGTTGAAGGTGAGAGTTGTGAAGGAAGAGTCTGCAACGAAGGAACAGAGGAACGGTGGTTCTGTGAGGCGGTTCTCTGTGAATTCTCCGGGGATGAGGTTGAGGGTCCACTCGCCCAAAATCGCCGGATGGAAGGGGCGGAAAAGTGTGTCGTCGACGGCGAGTTCCGGCTCCCGGAGAAGCCTCTCGGAGAGTTTTGCGGTTGTGAAGTCTTCTTTTGACCCACAGAAGGATTTCAGGGAGTCCATGGTGGAGATGATTGTGGAGAACAACATAAGGGCATCCAAGGACTTGGAGGATCTACTTGCTTGCTACCTTTCTCTCAATTCAGATCAGTATCACGACCTCATCATCAAAGTCTTCAAGCAAATTTGGTTTGATTTGACTCAACCAAGAGCTGCATAG 1155 0.4675 MGNHRFRLSDMIPNAWFYKLRDMGKGRKQNTTLSGKKKQTSSISITSTTSTTHSSKPNQPLHQYNNNNNPRKSYYITRDLKTSPSNTPKFSPPRKSTKQRTKRRAPRTTKFVSSGCSCRSTLESMWTKSDSPQEHSSSSPFDSSPESESPEFRTDRVLPCSSSFDEMVSLSTTSCASCKLNTNKNNPPTNDIIIDVDKNSIPRKDNKLDGYYSYNNSRNNDFDDTFSELELPPIITKPPKLLKKRELKQGSLKVRVVKEESATKEQRNGGSVRRFSVNSPGMRLRVHSPKIAGWKGRKSVSSTASSGSRRSLSESFAVVKSSFDPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDQYHDLIIKVFKQIWFDLTQPRAA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2582g00002 384 MobiDBLite consensus disorder prediction 27 154 - -
Vium2582g00002 384 MobiDBLite consensus disorder prediction 108 147 - -
Vium2582g00002 384 MobiDBLite consensus disorder prediction 27 94 - -
Vium2582g00002 384 Pfam Transcriptional repressor, ovate 322 378 IPR006458 -
Vium2582g00002 384 NCBIfam uncharacterized plant-specific domain TIGR01568 316 379 IPR006458 -
Vium2582g00002 384 ProSiteProfiles OVATE domain profile. 318 377 IPR006458 -
Vium2582g00002 384 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 66 379 IPR038933 GO:0045892
Vium2582g00002 384 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2582g00002 Vium-Chr2582 35848 39471 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium2582g00002 Ovate 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2582g00002 - - gmx:100785362 500.36