Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2579g00015 ATGAAGGTTGTGGGTGCTTATTTGCTTGCAGTTTTGGGAGGGAACCCAACTCCTTCTGCAAGTGATATCAAAAATATCCTTGGCGCAGTTGGAGCTGAAGCTGAGGATGAGTTGATTAACTTGCTCTTGGCTGAAGTTAAGGGCAAAGACTTCAATGAGCTACTCGCCAGCGGAAGGGAAAAGATGTCTGCTGTGTCTGGCGGTGGTGCTGCGGTGGCTGTTGCTGCTGCACCAGCTGCTGGAGGTGGTGGTGCTGCACCTGCCGCAGAAGCAAAGGAAGAAAAGAAAGTCGAAGAGAAGGAGGAGTCGGATGATGATATGGGTTTCAGTTTGTTCGACTAA 342 0.5 MKVVGAYLLAVLGGNPTPSASDIKNILGAVGAEAEDELINLLLAEVKGKDFNELLASGREKMSAVSGGGAAVAVAAAPAAGGGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2579g00015 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vium2579g00015 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vium2579g00015 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vium2579g00015 113 MobiDBLite consensus disorder prediction 80 113 - -
Vium2579g00015 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vium2579g00015 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vium2579g00015 113 MobiDBLite consensus disorder prediction 89 103 - -
Vium2579g00015 113 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2579g00015 Vium-Chr2579 137210 138619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2579g00015 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 61.404 7.18e-27 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2579g00015 K02943 - gmx:100791682 127.102