Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2579g00014 ATGCAGGTTAGTATTGATGGTCTGCTCTGCTGCACAATATCAGATGACCGCTCTGTAAAAATATACGATGTAGTAAACTATGACATGATGGTCATGATTCGCTTGCCATATACTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCCAGACTTGCTATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATTGTCTCCAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAACGCCGTGTATGATTCCGTAATTTCAGCAGATGAAAAGGGGATAATTGAATATTGGAGTCCTGTGACACTTCAATTCCCAGAGGATGAGGTCAATTTTAAACTGAAAAGTGATACTGACCTCTTTGAAATTGCTAAATGCAAGACTTCTGTTTCAGCTATCGAGGTAAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGATCGAAGGATCCGTGTGTTTTGGTTCAGAACGGGTAAATTAAGGCGAGTTTATGATGAATCTTTAGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATATCGGTTGGAAGCTATTGATTTTGGTCGAAGAATGGCTGTTGAGAAGGAAATAGAAAAAACAGAAAGTGCACCACTTCCAAATGCAGTCTTTGATGAAAGTTCCAATTTTCTTATATATGCAACCTTGCTTGGGATAAAAATTGTTAATCTGCACACCAATAAAGTTAGTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGGAGTAGCAAAAGAGTAAGAAAGATTCCTTCGGCAGCTGCAAATGTTAATGAGAGTAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTTAAAAAGCACAGAATATATTTATTCAGTCGAAGAGAGCCGGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGACATTGGAAAGTCAGTTACAACGTCACTTCCTGAGAATGTGATTCTACACACCACAATGGGTGATATTCACATGAAATTATACCCTGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACACACTGCCGAAATGGGTATTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATTCAAACAGGAGATCCTCTGGGAGATGGCACTGGTGGGCAATCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGTTTGAGGCATGATAGACCGTTCACAGTTTCTATGGCAAATGCTGGCCCTAATACAAATGGCTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCAAAGGGAATGGATGTTGTACAGGCCATAGAGAAAGTGAAGACAGACAAGACAGACAAACCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCGAAGTCTTGA 1542 0.3969 MQVSIDGLLCCTISDDRSVKIYDVVNYDMMVMIRLPYTPGAVEWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIVSKEIHMGPIKVMKYNAVYDSVISADEKGIIEYWSPVTLQFPEDEVNFKLKSDTDLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKRVRKIPSAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPENVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2579g00014 513 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 355 509 IPR044666 -
Vium2579g00014 513 CDD cyclophilin_WD40 361 508 - -
Vium2579g00014 513 Gene3D - 1 195 IPR015943 GO:0005515
Vium2579g00014 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 373 388 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 470 485 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 469 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 399 411 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 442 457 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 Gene3D - 348 513 IPR029000 -
Vium2579g00014 513 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 356 510 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 SUPERFAMILY Cyclophilin-like 358 510 IPR029000 -
Vium2579g00014 513 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 360 510 IPR002130 GO:0000413|GO:0003755
Vium2579g00014 513 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 341 511 - -
Vium2579g00014 513 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 394 411 IPR020892 GO:0003755|GO:0006457
Vium2579g00014 513 SUPERFAMILY WD40 repeat-like 3 245 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2579g00014 Vium-Chr2579 130039 135252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2579g00014 360 510 U-box Gene Family AT5G67530 47.020 3.32e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2579g00014 K12736 - gmx:100792207 1002.28