Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2579g00013 ATGGAAGAACACGAGAATGGTGCCAACGCTGGAGAAGAGGAACCGATGATAGGCCCGGGCCCGGCCCCTCGGGCTCGGCCCAAGCGACCCCTTCAGTTCGAGCAGGCCTACCTCAACGCTTTACCCTCCGCCAACATGTATGAGAAAAGTTACATGCACCGTGACGTGGTTACGCATGTTGCTGTTTCAGCTGCGGATTTTTTCATCACTGGAAGTTCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGTCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTCTGCTGCACAATATCAGATGACCGCTCTGTAAAAATATACGATGTAGTAAACTATGACATGATGGTCATGATTCGCTTGCCATATACTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCCAGACTTGCTATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATTGTCTCCAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAACGCCGTGTATGATTCCGTAATTTCAGCAGATGAAAAGGGGATAATTGAATATTGGAGTCCTGTGACACTTCAATTCCCAGAGGATGAGGTCAATTTTAAACTGAAAAGTGATACTGACCTCTTTGAAATTGCTAAATGCAAGACTTCTGTTTCAGCTATCGAGGTAAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGATCGAAGGATCCGTGTGTTTTGGTTCAGAACGGGTAAATTAAGGCGAGTTTATGATGAATCTTTAGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATATCGGTTGGAAGCTATTGATTTTGGTCGAAGAATGGCTGTTGAGAAGGAAATAGAAAAAACAGAAAGTGCACCACTTCCAAATGCAGTCTTTGATGAAAGTTCCAATTTTCTTATATATGCAACCTTGCTTGGGATAAAAATTGTTAATCTGCACACCAATAAAGTTAGTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCGGAGTAGCAAAAGAGTAAGAAAGATTCCTTCGGCAGCTGCAAATGTTAATGAGAGTAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTTAAAAAGCACAGAATATATTTATTCAGTCGAAGAGAGCCGGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGACATTGGAAAGTCAGTTACAACGTCACTTCCTGAGAATGTGATTCTACACACCACAATGGGTGATATTCACATGAAATTATACCCTGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACACACTGCCGAAATGGGTATTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATTCAAACAGGAGATCCTCTGGGAGATGGCACTGGTGGGCAATCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGTTTGAGGCATGATAGACCGTTCACAGTTTCTATGGCAAATGCTGGCCCTAATACAAATGGCTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCAAAGGGAATGGATGTTGTACAGGCCATAGAGAAAGTGAAGACAGACAAGACAGACAAACCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCGAAGTCTTGA 1848 0.415 MEEHENGANAGEEEPMIGPGPAPRARPKRPLQFEQAYLNALPSANMYEKSYMHRDVVTHVAVSAADFFITGSSDGHLKFWKKKSIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISDDRSVKIYDVVNYDMMVMIRLPYTPGAVEWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIVSKEIHMGPIKVMKYNAVYDSVISADEKGIIEYWSPVTLQFPEDEVNFKLKSDTDLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKRVRKIPSAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPENVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2579g00013 615 SUPERFAMILY Cyclophilin-like 460 612 IPR029000 -
Vium2579g00013 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Vium2579g00013 615 Gene3D - 450 615 IPR029000 -
Vium2579g00013 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 475 490 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 559 571 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 501 513 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 572 587 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 544 559 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 462 612 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 Gene3D - 38 292 IPR015943 GO:0005515
Vium2579g00013 615 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 496 513 IPR020892 GO:0003755|GO:0006457
Vium2579g00013 615 SUPERFAMILY WD40 repeat-like 44 359 IPR036322 GO:0005515
Vium2579g00013 615 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 47 310 - -
Vium2579g00013 615 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 458 612 IPR002130 GO:0000413|GO:0003755
Vium2579g00013 615 CDD cyclophilin_WD40 463 610 - -
Vium2579g00013 615 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 457 611 IPR044666 -
Vium2579g00013 615 MobiDBLite consensus disorder prediction 1 28 - -
Vium2579g00013 615 SMART WD40_4 232 271 IPR001680 GO:0005515
Vium2579g00013 615 SMART WD40_4 44 81 IPR001680 GO:0005515
Vium2579g00013 615 SMART WD40_4 86 125 IPR001680 GO:0005515
Vium2579g00013 615 SMART WD40_4 176 215 IPR001680 GO:0005515
Vium2579g00013 615 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 443 613 - -
Vium2579g00013 615 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Vium2579g00013 615 Pfam WD domain, G-beta repeat 57 81 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2579g00013 Vium-Chr2579 129234 135252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2579g00013 462 612 U-box Gene Family AT5G67530 47.020 1.96e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2579g00013 K12736 - gmx:100792207 1175.61