Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2579g00011 ATGGATGTAACCATGAACAATGATGACTACTCTTTCTCTTCATCACCATCATCCACTTCTTCTCAAAGCCAACTTTGCAACCCGAATTCTCCATCGGATAATTCATCCTTCCCCTCACAAAAACCAGAGTTGAGTTCTCACAAGAGGAAAGCTGGGAGAAAGAAGTTTCGAGAAACACGGCATCCGGTGTATAGAGGAGTTCGTCAGAGAAACGGTAACAGATGGGTGTGTGAAGTTCGTGAACCCAACACCAAATCAAGGATATGGCTCGGAACATACTCTGCACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCATCATTCAATTTCCCTGATTCGGTTTCTCTTCTTCCAGTTGCAAATTCATCTTCAGCTGCAGATATTAGAGCGGCTGCAGCACAAGTTTCCGAGGTTTTTTTACCGGCCAACCCTTCTTCGTCCTTTACAAGGGTTGAAATAGAAACTAACCCTTGTTCGTCCAACGAATCAGTGTTTTTCGACGAAGAGGCAGTTTATAACATGCCAGGTTTGTTAGATAGCATGGCTGATGGTCTTCTCATTACTCCACCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACATATTAA 663 0.448 MDVTMNNDDYSFSSSPSSTSSQSQLCNPNSPSDNSSFPSQKPELSSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVREPNTKSRIWLGTYSAPEMAARAHDVAALALKGTSASFNFPDSVSLLPVANSSSAADIRAAAAQVSEVFLPANPSSSFTRVEIETNPCSSNESVFFDEEAVYNMPGLLDSMADGLLITPPSMKRFDWDEVDCETDLTLWTY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2579g00011 220 MobiDBLite consensus disorder prediction 1 42 - -
Vium2579g00011 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 220 IPR045277 GO:0003700
Vium2579g00011 220 MobiDBLite consensus disorder prediction 47 61 - -
Vium2579g00011 220 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Vium2579g00011 220 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Vium2579g00011 220 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Vium2579g00011 220 MobiDBLite consensus disorder prediction 1 61 - -
Vium2579g00011 220 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vium2579g00011 220 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vium2579g00011 220 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Vium2579g00011 220 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Vium2579g00011 220 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Vium2579g00011 220 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2579g00011 Vium-Chr2579 116447 117157 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2579g00011 18 220 AP2-EREBP Transcription Factor Family AT4G25470 45.116 1.95e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2579g00011 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2579g00011 - - vra:106758293 340.887