Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2579g00008 ATGCTCACACTACCAAAATTCACACATAACTCCAATTTCCACTCTCAATTTCTCTTGTTATCACCACAAAAGTTACAATCTACCATGAATTTTGAGATTGAATATCCTTTTTCATTTCAATCTTCTTCCACCATTTTCCAATCATCATCACTCACACCACCTAATAATAATAATACTAACCCGAACCTACTTTCACATCCTTTAGTTCATGCACAATTTGTAGTTTCTCCCAAAAGGAAAGGTGGGAGAAAGAAGTTCAAGGAAACGCGCCACCCTATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAGCTCAGGGAACCCAAGAAGACCACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCAATTAGGGGCACCTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTTTTCTTCCAATCCTTAACTCCTCTTCACCTAAAGATATTCGAGCAGCCGCAGCAGAAGCTGCTGAGAGTTTCAGACCGATCTCGCTTTCTTCCTTGTCCAATTCTCGTAACGAGAAAACCGGTCGCAAAACTAAGTGCAGGAGGGTTTGTAAAAAGGTTTCATCAATGGAGGAAAAGACACAGACAACGGTGTTGGAGTCGTCCTTGAATAACATGCAGAATTTGGATCGTGAAAAATGTGATGTTATCGACAGTGGCATGGAGAAAAACAACTGTGATTTGTCTTCGACTGTGTTCTTCGATGAGGAGGCATTGTTTAACATGCCTGGTCTCTTGGATAGAATGGCAGAGAGTTTATGTCTTTTTCCACTACCTTCGGTAGATTATTGGGATGATCATGCTTATTTCACAGACTTCAATTTGTGGACTGATTGA 894 0.4195 MLTLPKFTHNSNFHSQFLLLSPQKLQSTMNFEIEYPFSFQSSSTIFQSSSLTPPNNNNTNPNLLSHPLVHAQFVVSPKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSASFLPILNSSSPKDIRAAAAEAAESFRPISLSSLSNSRNEKTGRKTKCRRVCKKVSSMEEKTQTTVLESSLNNMQNLDREKCDVIDSGMEKNNCDLSSTVFFDEEALFNMPGLLDRMAESLCLFPLPSVDYWDDHAYFTDFNLWTD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2579g00008 297 CDD AP2 92 151 IPR001471 GO:0003700|GO:0006355
Vium2579g00008 297 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 41 296 IPR045277 GO:0003700
Vium2579g00008 297 Gene3D AP2/ERF domain 93 150 IPR036955 GO:0003700|GO:0006355
Vium2579g00008 297 ProSiteProfiles AP2/ERF domain profile. 93 149 IPR001471 GO:0003700|GO:0006355
Vium2579g00008 297 SMART rav1_2 93 155 IPR001471 GO:0003700|GO:0006355
Vium2579g00008 297 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Vium2579g00008 297 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Vium2579g00008 297 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Vium2579g00008 297 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2579g00008 Vium-Chr2579 66420 67552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2579g00008 38 296 AP2-EREBP Transcription Factor Family AT4G25470 41.445 1.80e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2579g00008 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2579g00008 - - vum:124831015 564.303