Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2576g00012 ATGTCATCGCCGGGGTTCACTGGAGGAGGTGGGGCGTCGGAGTATTTCGCCGGAGCGGGTGGATTCACCGGCAGATCCATTCCGGCAGCCACCATGAACAACCCGAACGGCGTCTCGACTGCCACCGCAAACCTCCACCCTCTCTACCGAACCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAAACACCAACCCTTATGGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTATAACCAAGCCTATAACCAACCCAACAACAACCCCAACCACGTCCTCTCCAACCTCTTGCTTCGTTCCGTTAAGCCTCGAACCAGTTTCTCTCAGGTTTCCATGGATAACTTTCCCGAATTGCATAACCAAAACCCTTCTCTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCCAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCTGATTTGGGCATGCCACAGAACCGGGTTCGACTTTCTGGTCCTCTTCCGGTTCCCGTTCAGGTGGCTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTGGAATTGGAGAAACAACTTCTGGAAGACAACGATGAAGGAGAAGCCGATGCTGCGTCCGTGATAACCTCCAGCGAGTGGTCTGAAACGTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACTGGCTTCCACATCACCGACTTCATCAACCACGTCGTCTACTTCATCATCTTCCTCCATCGCTTCACCTGCTTCCGGATGCTCAAAGCAGACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAATATGACATGGTTACTGAGATCCTGAACCGGTTGAACGGTCCGAACCGGACTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGTGGAATATCCGCCTCCAGTGAAGGAGCTTTTCGGCTATGAACACGCTGAGTCCACTCAGTTGATTTTGGAAAACTCCATGTGCTTTAAGGTAGGGTTAATGGCTGCGAATCTGGCGATTTTGGAAGCTGCATTTGAGGAGAAAACCGTAAACAAGTTCTGCGTGATGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTCATCAACGCGCTCTCAGCACGTGAACAAAACGTCACGCTCAAAATAGTGGCTGTGGCCGAGAGCGGCAGCGAAGACAGAGTACATGTCGTCGGAGACATGCTGAGTCGTCTAGCAGAAAGGAAGAGGATCGGGTTCGAGTTCAGACTTGTATCAACTCAGAAACTCACCGAGTTGACTCGTGAGTCACTGGGATGCAATGAGGACGAAGTTCTCATGGTGAACTTTGCTTTCAAGCTTAACAAAATCCCTGATGAGAGCGTCTCTACCGAAAATCCTCGTGACGAACTTCTCCGGCGCGTGAAGGGACTCGCACCGCGCGTGGTGACAATAGTGGAGCAGGAGATGAACGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTATGGTGCCTTATTGGAGTCCATGACATCTAGGGATAACAATAACACCATCAACAGCTCTGACCGAGTCAGACTCGAAGAAGGACTGACCCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGGGATCGCATAGAGCGTTGTGAAGTGTTTGGAAAATGGCGAGCGCGCATGAGCATGGCAGGGTTCGAGTTAAAGCCACTGAGTCAAAACATGGCCGAGTCAATAAAATCACGACTCACTGCCACCAACAACAATAACCGAGTCAACTCGGGACTGACAGTGAAGGAAGAGAACGGTGGTATTTTCTCAGGCTGGATGGGAAGAACACTGACGGTAGCATCTGCTTGGCGTTAA 1947 0.51 MSSPGFTGGGGASEYFAGAGGFTGRSIPAATMNNPNGVSTATANLHPLYRTQQQNLPAMFLDPASQIAQRQTPTLMGKRTLTEFQTYNQTYNQAYNQPNNNPNHVLSNLLLRSVKPRTSFSQVSMDNFPELHNQNPSLYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSDLGMPQNRVRLSGPLPVPVQVAEPEKKIMDHRLLELEKQLLEDNDEGEADAASVITSSEWSETYQNLISPGPVQKLASTSPTSSTTSSTSSSSSIASPASGCSKQTLMEAASAIVEGKYDMVTEILNRLNGPNRTDKLTDCMVLALKSRMNPVEYPPPVKELFGYEHAESTQLILENSMCFKVGLMAANLAILEAAFEEKTVNKFCVMDFEIGQGKQYPHLINALSAREQNVTLKIVAVAESGSEDRVHVVGDMLSRLAERKRIGFEFRLVSTQKLTELTRESLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMTSRDNNNTINSSDRVRLEEGLTRKLHNSVACEGRDRIERCEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTATNNNNRVNSGLTVKEENGGIFSGWMGRTLTVASAWR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2576g00012 648 MobiDBLite consensus disorder prediction 153 188 - -
Vium2576g00012 648 MobiDBLite consensus disorder prediction 248 277 - -
Vium2576g00012 648 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 254 620 IPR005202 -
Vium2576g00012 648 ProSiteProfiles GRAS family profile. 263 648 IPR005202 -
Vium2576g00012 648 MobiDBLite consensus disorder prediction 155 171 - -
Vium2576g00012 648 Pfam GRAS domain family 281 648 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2576g00012 Vium-Chr2576 117709 120080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2576g00012 38 648 GRAS Transcription Factor Family AT5G52510 47.050 2.09e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2576g00012 GRAS 5.1e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2576g00012 - - vun:114181888 1127.08