Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2576g00011 ACATCTGTGTTCTGTCTCGACTGCGACTGCGGATTCATCGAAGAAATCGAACACCCGCCGCGCTCAGTCCACCTCGACCCTCGCTGTCGTCGCTTCCCTGCTGCCGCCATGTACATTATCGGCCAACGCCCTGCCTCCGACAACGCTGTCCGTCCCTTCCTGCGCCGCACCCGCCACAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGCTACCAACGAGGAGGAAAGTCGAGGCTTTGAGCTCTTCTACGACGATGGTGCCGGTTCTGGCTTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGATTTGGATTCGATAGGCTTCTAGAGCAACTGTCTCAGATTGAGATCAACGATATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCGTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCGCGGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTAAATGCATCTTACCATGGCTAGCTTCAAAGGTTTTCAATTTGGGGTGA 618 0.5372 TSVFCLDCDCGFIEEIEHPPRSVHLDPRCRRFPAAAMYIIGQRPASDNAVRPFLRRTRHNGGDRSPFNPVIVLRGSAAATSATNEEESRGFELFYDDGAGSGLRPLPPSMSEFLLGFGFDRLLEQLSQIEINDIGRYEHPPASKAAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPKCILPWLASKVFNLG 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2576g00011 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 201 IPR013083 -
Vium2576g00011 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 198 - -
Vium2576g00011 205 SUPERFAMILY RING/U-box 146 200 - -
Vium2576g00011 205 Pfam RING-like zinc finger 166 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2576g00011 Vium-Chr2576 107053 107670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2576g00011 105 200 C3H Transcription Factor Family AT5G01980 38.542 1.74e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2576g00011 K11982 - gmx:100807324 344.739