Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2576g00009 ATGGATGCGAATATTGATGATAAGAGTGAAAGCAGACTATATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTCAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGCGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCCGAATTAGCCAAGGAGAAAATGCATGGGAGGTTTGCCTGTGGCCGGCCGCTGGTTGTTCGTCTTGCCGGCGAGAAGTGCTTGCTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGGGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAGACAGAAGCAAAGTGACAATATATATTGA 474 0.4451 MDANIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKRQKQSDNIY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2576g00009 157 CDD RRM_RBM18 12 90 IPR039157 -
Vium2576g00009 157 Gene3D - 8 102 IPR012677 -
Vium2576g00009 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Vium2576g00009 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 92 - -
Vium2576g00009 157 Coils Coil 130 150 - -
Vium2576g00009 157 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Vium2576g00009 157 SMART rrm1_1 12 88 IPR000504 GO:0003723
Vium2576g00009 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2576g00009 Vium-Chr2576 54901 57198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2576g00009 11 93 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.62e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2576g00009 K24527 - gmx:100806572 280.411