Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2576g00008 ATGCTTTCCAGAGCTGCTTTGCTCAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGCGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCCGAATTAGCCAAGGAGAAAATGCATGGGAGGTTTGCCTGTGGCCGGCCGCTGGTTGTTCGTCTTGCCGGCGAGAAGTGCTTGCTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGGGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAGACAGAAGCAAAGTGACAATATATATTGA 414 0.4662 MLSRAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKRQKQSDNIY 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2576g00008 137 Gene3D - 2 83 IPR012677 -
Vium2576g00008 137 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 4 74 - -
Vium2576g00008 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 65 IPR000504 GO:0003723
Vium2576g00008 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Vium2576g00008 137 Coils Coil 110 130 - -
Vium2576g00008 137 SMART rrm1_1 2 68 IPR000504 GO:0003723
Vium2576g00008 137 SUPERFAMILY RNA-binding domain, RBD 6 74 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2576g00008 Vium-Chr2576 53293 54008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2576g00008 7 73 Eukaryotic Initiation Factors Gene Family AT1G71770 40.299 1.76e-07 47.0