Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2576g00005 ATGGAGACTCAAAAGCTAATTATACATCTCATTCTTCTTCTCCTTTGCATTCCTTGTTCATCCTCTTTCACTCCCATAGATAACTACCTTCTTAGCTGTGGATCACAGAACAATGCTTCTCTCTTCAACCGCATCTTCATTGGTGATTCCACCAACCAAGTCTCAAGTTTTCTCTCTGCTGACAAATCCATTTCCCTCACCAACCAAAACCCTCCTCCGGATTTGCCCATTTTGTATCACACTGCAAGAGTTTTCCCCAGCACAGGAAGTTTCAGGTTCAACGTGAGAAAGCATGGCACCCAATTGGTTCGTTTTCATTTCTCACCTTTTAAAGCTCAAGGGTTTGATCTAAAAGCTGCTAACTTCAGTGTCTTGGTTGATGGTAATTTGGTGCTTAGAAATTTCAAGCCAAGTAATGGTGTGTTGCTTAAGGAGTTTATTCTGAAGATAGAGTCAAATTTACTTGAAATTGTGTTTAGACCTGAAGGTAATTCAGGTTTTGGCTTTGTAAATGCTATGGAGGTGTTCACTGCTCCTGTTGATTTTGTTATAGATTATGGAGCAAGGTTAGTGGGTCCTTTTGGTGTGGTAGAGTACAAGAACCTTTCATCTCAGGTTTTGGAAACTGTCCATAGGATTAATGTTGGGGGTGCGAAAGTAACTCCTTTTAATGACACCCTTTGGAGGACATGGATTCCTGACGAGGAATTTCTGGTTTTTAAGGATGCTGCTAAGCCTGCGGTGAGTAATCAAACACCAAATTTCCAGAAAGGAGGCGCCACTAGGGAGATCGCGCCAGATAGTGTTTACATGACTGCACAGGAAATGGACAAGGATCACGCCATTATAGGTTCACAGTTCAACATAACCTGGGATTTTCCAGTGGCTCCAGGTGGTGTTCGGCACTTGATTCGGTTGCATTTCTGTGATATTGTTAGTCCTGTTCTTAATTTGCTCTATTTTGACGTGTATATCAACGGGTATTCTGCATACAAAGATTTGGATTTGTCATCCCTTGCAGTCCATGTGCTTGCATCTCCGGTCTATGTGGATTTTGTTGCAGATTCTAATGATTCAGGTGTTATTCGAATAAGTGTTGGCCCTTCTGAACTGAGCGGTTCTAGGGGGATGAATGCCATTCTGAATGGGGCAGAGATAATGCAGCTGGTGAATGTTGTGGACTCACGTGTTGTTCCTGGGAAGAAGAGGTTATGGATATTGGTGGGTTCAATTGCAGGTGGTGTTGTTGTTTTGCTTTTAGTTATGTCTGCTTTTGTGCTTGCTCTCAAATGCAGGAAGAAGAAGAAGAAGAAGAAACCAAAACAAAGAACACTGGAAAGTGTAGGATGGACTCCTTTACGTGTGTTTGGGGGGAGTTCACTTAGTAGAATGTCTGAAGGAACAGCTTTTCCCTCTCCTGGTTCTTATGGTTATTTCGGATTGAGAATCCCTTTTGCTGATATACAATTAGCCACAAATAACTTCGATAGGAGTCTAATTATAGGATCTGGTGGGTTTGGTATGGTTTACAAAGGAGTGCTCAAAGACAATGTGAAGGCTGCTGTCAAGAGAGGCATGCCTGGATCAAGACAAGGACTTCCTGAATTCCAGACTGAAATAACAATCTTATCCAAAATTCGCCATCGCCATCTTGTTTCACTGGTTGGATACTGTGAAGAAAATTCAGAGATGATACTAGTCTATGAGTATGTTGAAAAGGGTCCACTCAAAAAGCATCTATATGGTTCAGCAGTACATGCACCTTTGTCTTGGAAGCAGCGGCTTGAGATATGCATTGGTGCAGCTAGGGGTCTCCACTATCTACACACAGGTTTCGCGCAAGGAATCATACACCGTGATATCAAATCAACCAATATTTTGCTGGATGAGAACTATGTTGCCAAGGTTGCTGATTTTGGTCTCTCAAGATCAGGACCTTGTCTCAACGAAACCCATGTTAGTACTGGTGTGAAAGGGAGTTTTGGTTATCTTGATCCAGAGTATTTCCGACGGCAGCAGCTTACGGATAAGTCAGATGTTTACTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCTAGATCTGCTGTTGATCCACAACTTGATAGGGAACAGGTGAACTTAGCCGAATGGGCACTTGAATGGCAGAAAAAAGGCATGCTGGAACATATTATTGATCCTCATCTTGTTGGGAATATAAAGCAAAGCTCGTTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGATAGGCCAACTATGGGTACTGTATTGTGGAATTTGGAATATGCACTTCAGCTCCATGAAAGTGACCAAGAAGAGGAGCCATTCGATGATAGCAGTGCTCAGGAAACAGTGAATGTGAATACTACGATAACTCCTGGGAGTCCTTCTAGCAACATGAGAAGAGAGGAAAATAATGATAATGGTTATTCAGACATAAGTGCTACTGAAGTTTTTTCTCAACTAATGAAGAGTGAAGGTAGATAG 2505 0.4196 METQKLIIHLILLLLCIPCSSSFTPIDNYLLSCGSQNNASLFNRIFIGDSTNQVSSFLSADKSISLTNQNPPPDLPILYHTARVFPSTGSFRFNVRKHGTQLVRFHFSPFKAQGFDLKAANFSVLVDGNLVLRNFKPSNGVLLKEFILKIESNLLEIVFRPEGNSGFGFVNAMEVFTAPVDFVIDYGARLVGPFGVVEYKNLSSQVLETVHRINVGGAKVTPFNDTLWRTWIPDEEFLVFKDAAKPAVSNQTPNFQKGGATREIAPDSVYMTAQEMDKDHAIIGSQFNITWDFPVAPGGVRHLIRLHFCDIVSPVLNLLYFDVYINGYSAYKDLDLSSLAVHVLASPVYVDFVADSNDSGVIRISVGPSELSGSRGMNAILNGAEIMQLVNVVDSRVVPGKKRLWILVGSIAGGVVVLLLVMSAFVLALKCRKKKKKKKPKQRTLESVGWTPLRVFGGSSLSRMSEGTAFPSPGSYGYFGLRIPFADIQLATNNFDRSLIIGSGGFGMVYKGVLKDNVKAAVKRGMPGSRQGLPEFQTEITILSKIRHRHLVSLVGYCEENSEMILVYEYVEKGPLKKHLYGSAVHAPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCLNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARSAVDPQLDREQVNLAEWALEWQKKGMLEHIIDPHLVGNIKQSSLKKFGETAEKCLAEYGVDRPTMGTVLWNLEYALQLHESDQEEEPFDDSSAQETVNVNTTITPGSPSSNMRREENNDNGYSDISATEVFSQLMKSEGR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2576g00005 834 Pfam Protein tyrosine and serine/threonine kinase 500 708 IPR001245 GO:0004672|GO:0006468
Vium2576g00005 834 SMART serkin_6 495 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2576g00005 834 CDD STKc_IRAK 501 767 - -
Vium2576g00005 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vium2576g00005 834 MobiDBLite consensus disorder prediction 775 822 - -
Vium2576g00005 834 FunFam Receptor-like protein kinase FERONIA 571 784 - -
Vium2576g00005 834 FunFam Receptor-like protein kinase FERONIA 206 391 - -
Vium2576g00005 834 FunFam receptor-like protein kinase FERONIA 463 570 - -
Vium2576g00005 834 MobiDBLite consensus disorder prediction 786 822 - -
Vium2576g00005 834 Pfam Malectin-like domain 31 388 IPR024788 -
Vium2576g00005 834 SUPERFAMILY Protein kinase-like (PK-like) 478 768 IPR011009 -
Vium2576g00005 834 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Vium2576g00005 834 Gene3D Transferase(Phosphotransferase) domain 1 571 794 - -
Vium2576g00005 834 FunFam Putative receptor-like protein kinase 28 179 - -
Vium2576g00005 834 PANTHER OS07G0166700 PROTEIN 482 773 IPR045272 GO:0004714|GO:0006468
Vium2576g00005 834 Gene3D Phosphorylase Kinase; domain 1 475 570 - -
Vium2576g00005 834 ProSiteProfiles Protein kinase domain profile. 495 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2576g00005 834 Gene3D - 28 181 - -
Vium2576g00005 834 Gene3D - 206 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2576g00005 Vium-Chr2576 43786 46932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2576g00005 6 834 Receptor kinase-like Gene Family AT3G46290 49.766 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium2576g00005 Malectin_like 4.9e-30 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2576g00005 - - gmx:100787484 1452.57