Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2576g00001 GTTGAAAATCTCAAAAAGTTTAAGAGTGGTGATGATTGTCCTACGTTGGTTTGTACGAACGTGGCTGCTAGGGGAGACTTTGATGTAGATCATGTTGTGATGTTGTTTGACTTCCCCTTGAATTATATTGACTACCTTCATCGCACAGGTAGTATTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAGGGACTTGGACTTGGCCAGCAAAATAAAGGAAGCAATAAGGAACAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTCGAAGGGACACTACAAGGACCCAAATCACAGAGCAGAAGGGAAAGGATAGAAAAATGGTTCAAGTTTCAAAAGTCAAGGGCAAATTTGGTAGTCATTCCAGATCTGGAAATAATGGATCAGGTATAAAATCTGGCAAAGCTTCACCAGTCAAATCTACGAAAAAAGGGATTAACGTTTCAAAATCTGGGAAATCTTCTAGGGCAAGTAGCACCATTAGAAAAGGTTCTTCAGATAAGATCCATGAAAAATAG 534 0.3951 VENLKKFKSGDDCPTLVCTNVAARGXDFDVDHVVMLFDFPLNYIDYLHRTGSIARMGAKGKVTSLVAKRDLDLASKIKEAIRNNESLEAITKESVRRDTTRTQITEQKGKDRKMVQVSKVKGKFGSHSRSGNNGSGIKSGKASPVKSTKKGINVSKSGKSSRASSTIRKGSSDKIHEK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2576g00001 178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 96 IPR001650 -
Vium2576g00001 178 MobiDBLite consensus disorder prediction 123 168 - -
Vium2576g00001 178 Gene3D - 1 157 IPR027417 -
Vium2576g00001 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 92 IPR027417 -
Vium2576g00001 178 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 2 94 - -
Vium2576g00001 178 MobiDBLite consensus disorder prediction 98 178 - -
Vium2576g00001 178 Pfam Helicase conserved C-terminal domain 3 57 IPR001650 -
Vium2576g00001 178 MobiDBLite consensus disorder prediction 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2576g00001 Vium-Chr2576 670 1990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2576g00001 4 79 Eukaryotic Initiation Factors Gene Family AT3G19760 34.211 1.83e-06 45.1