Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium256g00001 ATGCAGAGCGCAGAGGTAACAACAGCGATGGTTGCTGCCCAGTTTTTGACTGTGGGTTTGAACACTCTGGTAAAAGCAAACCTCTCCAAAGGCATGAGCAATTACGTTTTCGTTGCTTATTCCAATCTCTTCGGATTCTGTCTCCTGCTAATTGCAACCACCCTTCGTTACAGAAACAGATCTCCCACACCGCTCAACAACTTCATTCTCTTCAGAATTTTTCTCATTGGCTTCCTCAGTATTTCCATTCAGACGCTTGCTTATGCTGGGCTTGGATATAGCTCTCCCACTCTCATCTCAGCCATTGAAGATCTTCTTCCAGCTTTTACTTTCCTAATAGCTATTGTTTTCAGGATGGAAAAGCTGGACCTAAAGCTAAGAAGCTGCCAAGCAAAAACCATTGGGACTGTGGTCTCAATTGCAGGGGCATTAACAATGACTTTGTACAAAGGTTTTGCTGTGACAAGTAATCTCATGCAAAACAATTTAGTGCTCTCATCTCAACAATCACAATGGCTACTAGGAGCATTTCTCCTAGCAACTGCTACCTTTGGTGGTTCAGTCTCACTTGTTATACAGACATGGACAATTAAGGACTACCCAGAGGAGCTAATGCTAATAACCATTGCTACCAGTTTCTCTGTAATCCTATCTTTCGTAGTTGCTTTCATTGCAGAGCAAAATCCCAAGGCATGGATACTTAAGCCTGATATGGAATTGGTGTGCATATTGTATTCAGCCATTGTAGTGCTGTCTATACGAAGTGTGGTGTATGCATGGGCATGTCGAAAGAAGGGAGCTGTGTATGTTGCTATGTTCAATCCTTTAGGAATTGTGATTGCACTTGCTATGGGGATTGTGTTTCTCGGAGACACTCTATATCTTGGAAGTGTGATCGGAGCTGCTACAATAGCTGTTGGCTTTTATGCTGTAATATGGGGTCAGGCTCAAGAGGAAAACATGACTTGTGAAAAGCACGGAACCTGTGGAATTATCTGTTCATCTTCATCTTGTTCTGAAGTCACCCTCTTACTACATAAAACCAAAGACACAATGGTAGCCTGA 1065 0.4263 MQSAEVTTAMVAAQFLTVGLNTLVKANLSKGMSNYVFVAYSNLFGFCLLLIATTLRYRNRSPTPLNNFILFRIFLIGFLSISIQTLAYAGLGYSSPTLISAIEDLLPAFTFLIAIVFRMEKLDLKLRSCQAKTIGTVVSIAGALTMTLYKGFAVTSNLMQNNLVLSSQQSQWLLGAFLLATATFGGSVSLVIQTWTIKDYPEELMLITIATSFSVILSFVVAFIAEQNPKAWILKPDMELVCILYSAIVVLSIRSVVYAWACRKKGAVYVAMFNPLGIVIALAMGIVFLGDTLYLGSVIGAATIAVGFYAVIWGQAQEENMTCEKHGTCGIICSSSSCSEVTLLLHKTKDTMVA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium256g00001 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 316 - -
Vium256g00001 354 Pfam EamA-like transporter family 15 146 IPR000620 GO:0016020
Vium256g00001 354 Pfam EamA-like transporter family 174 312 IPR000620 GO:0016020
Vium256g00001 354 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 150 - -
Vium256g00001 354 PANTHER WAT1-RELATED PROTEIN 7 324 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium256g00001 Vium-Chr256 3584 7850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium256g00001 9 321 Nodulin-like Gene Family AT5G40240 42.284 6.40e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium256g00001 - - gmx:100792641 482.641