Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2567g00006 ATGAAAAGAAAGGGAGCTTACGAGAACCAAGAAGCTGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGATCAAATTCTTATTAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGGTTTAAAACGAGGGGGAAAGAGTTGCAGACTTCGATGGTTGAATTATCTAAAGCCAGATATCAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATCAGACTACATAGCCTCCTAGGGAATAGATGGTCGCTTATTGCGGGAAGATTGCCTGGGCGAACAGACAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAACACAATGATAACAACAAAAACATTCCTGTGGAATTAAGAATGGAATCTTCAAACGCTTTTGGTATTGCTATTGATCCTGCGAAATCTTCTGAAGCAGTAATGTGTACAGAGGTTATGATGGCAACTGAAGCAGTGAATGATTCAGTGAACACAAAGAATTTAATGTCAACAAATTATAATGAAAACCCATTTGCGTCTGTCCCAGCAGATCATCCAGAAGGTTTGGGCAAACAGTTTGATTTAACTGAGCTGTTAATGCCGCAGGAGGGTTGTGATTTCAATGGATATGCTTGTGTTGAAATACCCCCACATTTTGGAGAACACTCCTGCAGAGTTAATGATGCCATGTGTGAAACATGGTACGATGATTGGAAGAATGAAGACTATTTTCCACTAGATTATGATATGGATTTTCCTTTATTTTAA 786 0.3906 MKRKGAYENQEAVNRGPWSAEEDQILINYVHLHGEGKWGQISRRTGLKRGGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEEKHNDNNKNIPVELRMESSNAFGIAIDPAKSSEAVMCTEVMMATEAVNDSVNTKNLMSTNYNENPFASVPADHPEGLGKQFDLTELLMPQEGCDFNGYACVEIPPHFGEHSCRVNDAMCETWYDDWKNEDYFPLDYDMDFPLF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2567g00006 261 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Vium2567g00006 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium2567g00006 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vium2567g00006 261 SMART sant 67 115 IPR001005 -
Vium2567g00006 261 SMART sant 14 64 IPR001005 -
Vium2567g00006 261 CDD SANT 72 113 IPR001005 -
Vium2567g00006 261 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vium2567g00006 261 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vium2567g00006 261 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 144 - -
Vium2567g00006 261 FunFam Myb transcription factor 15 67 - -
Vium2567g00006 261 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vium2567g00006 261 Gene3D - 71 138 - -
Vium2567g00006 261 FunFam Transcription factor TT2 71 139 - -
Vium2567g00006 261 CDD SANT 17 62 IPR001005 -
Vium2567g00006 261 Gene3D - 7 68 - -
Vium2567g00006 261 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2567g00006 Vium-Chr2567 42182 43490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2567g00006 8 128 MYB Transcription Factor Family AT5G52600 66.116 9.96e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2567g00006 Myb_DNA-binding 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2567g00006 K09422 - gmx:547459 360.147