Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2567g00003 ATGACTGAAGAAAGTGCTGGAAACACAGTTGCAACCTCTATCACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTATTTCTTCCTGGAACGATACTAATAACACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAACCCTCACTGTTGAGTCCTCTCGCCGACTCATTGACCCTCCTGCTCCTTCCTCCAACGAGTTCATGGGAGAGCATGCTTCGGATAATCAACTTTGGACCCATGTTCTATCAGGTGTTGGATCTAACGGCGAGTTACAGAGCGGCCAAGAATTTGGAGAGAACTTTCTGGGTGCACTGTCATCAAAAAGCATGACAAGCACTATGTTTCAACCAGTCTGTGACTACTTGAAGAAACTTGATCATAGCAGTTGGGAATATAGTGGTTCAACTTCATTAAACAGTTTTGAGAAGCATTTAAATGGGTTCAATGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAATTATCTAATCTTGTAAGCACTTGCTCTATTGCCCCGCCAGACCCGGAAGTAAGTAGCCACTTTGATCCACAAACAAACAGCATGACCTTGAATTCTTCCATGGATCATTTCCCACAATCTGATCACTTCAAGCAACCTTTTGGAGACTCCACATGCTCTCTTGGAGGCGTAGCAAACAGAAATTCTGGAGTGTTCCCATCCTATGATCATGACACCAAGATCAAGCAAGAGTTTCATGCAAGTGAAGTGCAAGGTTCTGTATATGGAAAATCATTAAATGCAAATGGGTATCAAAATGGATTTAATGGCTTTTCAGTGGGTGATAGTTGCAAACTCTACCATGGGATGCCCAATCTTCCTCCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTCGATTTGGAAGGCCAGTTATTGGAATCCATGCTCAGAAGCCTAGCATGAAGTACCTGAACGTATCTGAACCAAAGAAACAGGGTCTTCAAGCACCATCACCGATAAGAACTAACATTAATGGAAAAGGGGAGGGTACAACACGTGAAGTAAAGAAGAAAAGATCAGAAGAATCTTCAGAAGCAATGTTAAAAAAGCTTAAGCAAGATACATCAACAGCTTCTTCTTCAAAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACTGCATCTGTGCTGTTCGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCGTACTTGAAGGCTAACTGTCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGACAAGGACGATACAAAGCTAGATCTTCGGAGCAGAGGTCTTTGA 1419 0.4207 MTEESAGNTVATSITPLNWWYLQANSISSWNDTNNTWNNQPNPNSSSSCEEDISVSTSFTNASNHSTLTVESSRRLIDPPAPSSNEFMGEHASDNQLWTHVLSGVGSNGELQSGQEFGENFLGALSSKSMTSTMFQPVCDYLKKLDHSSWEYSGSTSLNSFEKHLNGFNEAMIENNERLTKLSNLVSTCSIAPPDPEVSSHFDPQTNSMTLNSSMDHFPQSDHFKQPFGDSTCSLGGVANRNSGVFPSYDHDTKIKQEFHASEVQGSVYGKSLNANGYQNGFNGFSVGDSCKLYHGMPNLPPCTRNFSDVISFNSRFGRPVIGIHAQKPSMKYLNVSEPKKQGLQAPSPIRTNINGKGEGTTREVKKKRSEESSEAMLKKLKQDTSTASSSKAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANCHKDPWGSLDRKDKDDTKLDLRSRGL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2567g00003 472 CDD bHLH_AtbHLH_like 390 439 IPR045239 -
Vium2567g00003 472 Gene3D - 392 450 IPR036638 GO:0046983
Vium2567g00003 472 MobiDBLite consensus disorder prediction 338 394 - -
Vium2567g00003 472 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 151 472 - -
Vium2567g00003 472 MobiDBLite consensus disorder prediction 33 53 - -
Vium2567g00003 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 397 449 IPR036638 GO:0046983
Vium2567g00003 472 MobiDBLite consensus disorder prediction 360 379 - -
Vium2567g00003 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 382 431 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2567g00003 Vium-Chr2567 6912 10339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2567g00003 23 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 32.120 9.96e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2567g00003 - - vum:124830975 893.649