Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2567g00002 ATGACTGAAGAAAGTGCTGGAAACACAGTTGCAACCTCTATCACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTATTTCTTCCTGGAACGATACTAATAACACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAGGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAACCCTCACTGTTGAGTCCTCTCGCCGACTCATTGACCCTCCTGCTCCTTCCTCCAACGAGTTCATGGGAGAGCATGCTTCGGATAATCAACTTTGGACCCATGTTCTATCAGGTGTTGGATCTAACGGCGAGTTACAGAGCGGCCAAGAATTTGGAGAGAACTTTCTGGGTGCACTGTCATCAAAAAGCATGACAAGCACTATGTTTCAACCAGTCTGTGACTACTTGAAGAAACTTGATCATAGCAGTTGGGAATATAGTGGTTCAACTTCATTAAACAGTTTTGAGAAGCATTTAAATGGGTTCAATGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAATTATCTAATCTTGTAAGCACTTGCTCTATTGCCCCGCCAGACCCGGAAGTAAGTAGCCACTTTGATCCACAAACAAACAGCATGACCTTGAATTCTTCCATGGATCATTTCCCACAATCTGATCACTTCAAGCAACCTTTTGGAGACTCCACATGCTCTCTTGGAGGCGTAGCAAACAGAAATTCTGGAGTGTTCCCATCCTATGATCATGACACCAAGATCAAGCAAGAGTTTCATGCAAGTGAAGTGCAAGGTTCTGTATATGGAAAATCATTAAATGCAAATGGGTATCAAAATGGATTTAATGGCTTTTCAGTGGGTGATAGTTGCAAACTCTACCATGGGATGCCCAATCTTCCTCCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTCGATTTGGAAGGCCAGTTATTGGAATCCATGCTCAGAAGCCTAGCATGAAGTACCTGAACGTATCTGAACCAAAGAAACAGGGTCTTCAAGCACCATCACCGATAAGAACTAACATTAATGGAAAAGGGGAGGGTACAACACGTGAAGTAAAGAAGAAAAGATCAGAAGAATCTTCAGAAGCAATGTTAAAAAAGCTTAAGCAAGATACATCAACAGCTTCTTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACTGCATCTGTGCTGTTCGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCGTACTTGAAGGCTAACTGTCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGACAAGGACGATACAAAGCTAGATCTTCGGAGCAGAGGTCTTTGCTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGAGAGCGGTGGACCAGATTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1518 0.4236 MTEESAGNTVATSITPLNWWYLQANSISSWNDTNNTWNNQPNPNSSSSCEEDISVSTSFTNASNHSTLTVESSRRLIDPPAPSSNEFMGEHASDNQLWTHVLSGVGSNGELQSGQEFGENFLGALSSKSMTSTMFQPVCDYLKKLDHSSWEYSGSTSLNSFEKHLNGFNEAMIENNERLTKLSNLVSTCSIAPPDPEVSSHFDPQTNSMTLNSSMDHFPQSDHFKQPFGDSTCSLGGVANRNSGVFPSYDHDTKIKQEFHASEVQGSVYGKSLNANGYQNGFNGFSVGDSCKLYHGMPNLPPCTRNFSDVISFNSRFGRPVIGIHAQKPSMKYLNVSEPKKQGLQAPSPIRTNINGKGEGTTREVKKKRSEESSEAMLKKLKQDTSTASSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKANCHKDPWGSLDRKDKDDTKLDLRSRGLCLVPTSCTPLVYRESGGPDYWTPAYRGCLYR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2567g00002 505 Gene3D - 396 452 IPR036638 GO:0046983
Vium2567g00002 505 MobiDBLite consensus disorder prediction 33 53 - -
Vium2567g00002 505 CDD bHLH_AtbHLH_like 399 441 IPR045239 -
Vium2567g00002 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 451 IPR036638 GO:0046983
Vium2567g00002 505 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 153 483 - -
Vium2567g00002 505 MobiDBLite consensus disorder prediction 338 374 - -
Vium2567g00002 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Vium2567g00002 505 MobiDBLite consensus disorder prediction 360 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2567g00002 Vium-Chr2567 2750 6142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2567g00002 23 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.333 1.13e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2567g00002 - - vum:124830975 902.123