LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2565g00031	ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCGTCGCGGGGGGTGGGCGCCGGAGTCAAGCTGTTCGGGGTGAGACTGACGGATGGATCAATCATAAAGAAAAGTGCCAGTATGGGAAACCTTAACCTCGCCTCCACACACCACCATTCTTCTCCTTCTTCCTCCAACCTCGCCGCCTCCTCTCCCAACCCAAGCTCTCCCTGCTCCGACCCACCTCATGAGCCCCAAGGTTACTTGTCCGACGACCCCGCCCATATCTCCACCTTCGCTAACCGCCGCGGTGAAAGAAAAAAAGGTGTTGCGTGGACTGAAGAAGAGCATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGCATAGCACGTAATTTTGTCGTAACAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCGGATATGACTTCAGATCCACCTTCTGTGCCAGAAGAACAAGTTCTGCTTCCACCTTCTGAGAACTCCCAACCTTGTACTGGAAAATCGCAGCCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTTCTCAAGAAAACATGGAACAGACCAATGAAACTATGATGGGATCGAACGTACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAGCTGCAGCTCCTTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTGCCAAGGAACCTGTCAATGTTGACGAACTCGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAACCCTCTAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCCGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGA	1059	0.5024	MTRRCSHCSNNGHNSRTCPSRGVGAGVKLFGVRLTDGSIIKKSASMGNLNLASTHHHSSPSSSNLAASSPNPSSPCSDPPHEPQGYLSDDPAHISTFANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVTRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMTSDPPSVPEEQVLLPPSENSQPCTGKSQPSLNLSLKSEFEPMETSQENMEQTNETMMGSNVLTSMAPHGFFPTYLPVPFPIWPSAAAPFEEVKGGETSHHQVHRPIPVIAKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKNKAIQAV	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2565g00031	352	CDD	SANT	109	154	IPR001005	-
	Vium2565g00031	352	PANTHER	TRANSCRIPTION FACTOR KUA1	3	255	-	-
	Vium2565g00031	352	Gene3D	-	108	159	-	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	189	207	-	-
	Vium2565g00031	352	SUPERFAMILY	Homeodomain-like	104	158	IPR009057	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	164	207	-	-
	Vium2565g00031	352	Pfam	Myb-like DNA-binding domain	109	154	IPR001005	-
	Vium2565g00031	352	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	105	157	IPR006447	GO:0003677
	Vium2565g00031	352	FunFam	transcription factor MYB1R1	108	159	-	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	51	72	-	-
	Vium2565g00031	352	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	102	158	IPR017930	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	51	92	-	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	1	18	-	-
	Vium2565g00031	352	SMART	sant	106	156	IPR001005	-
	Vium2565g00031	352	ProSiteProfiles	SANT domain profile.	110	158	IPR017884	-
	Vium2565g00031	352	ProSiteProfiles	Myb-like domain profile.	102	154	IPR001005	-
	Vium2565g00031	352	MobiDBLite	consensus disorder prediction	329	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2565g00031	Vium-Chr2565	152134	157745	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vium2565g00031		Myb_DNA-binding	5e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2565g00031	-		-	gmx:778036	599.356