Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2565g00021 ATGAATCCTTCAATAAAACAACGGTTGAGGTTGCTACTTTTATATGTAATTCTGCTTCGTCTTTGTTGCACGAGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCTTTCTTGGCCTTTAAGCCTAAACCGGACCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACTTACGAAGACAATGGCTGGGATTATTTATTCATCAGAAAAAACTGTTCTTGTGATGCTGGTATGAAGAAATTTGTGTCTAACACCACACTAACAGTGAAATCCAATGGAGGGTTTGTGCATGATTTGGTGAAGGAAGCCTATGATGGGCTTGCTCTCTTGCCCAACACCACACATGGGGCAAGAAAAGATCATGGTATCATATCACTGAACTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATAAAAAATGGGGACAGTGTTGAGTCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATAATGGCATTGACAATCCTGTTCCTGGTGAGCTTTATCACTTCAAGAATGACACTCCTCCAGTTCCAGTCCCTTCCCCGTCTGTAGATGGATTTTCAGCCGACCAAATCAACCAGAAGGGTCGTATGTCCCATGAATGGATCGTAGGAGGTTTTGCGGTTGGTCTTGCTCTGATAATATTGAGCGTTGTTGTCTGTGTATTCCTGAGATCGCCTAATTGTTTGGTTGAAGCCAGAAATAATGCAACAAATTCTGCAGGAAAGATCTCTAACAAGTTCTATGTTTTTGGCAATCCAAATTTGTTATGTGGATGTGGCAAACCTGTGGATCAGAAGCAAACTGATGGTGAATCCAGCAGTCAACAAATTACCGTAACAACCAAAGCATCGTCCCTAATACCTCACATGTTGGACATGGATAGGCCTGTAGTTTTTTCATACGAAGAGATTTTTTACTCAACCGATAGTTTCTCTGATTCAAATCTGCTTGGGCACAGAGCACATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAGAGAATTACAGCCACTAAAACTAAAGAACTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGGTCGGCTATGCGGCTAGTCATGATGATTTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCTGCCATTTGCACGATACTCAAAATAAGGGTCATTCATCTCTCTCCTGGATCACAAGGGTCCAAATTGCACTTGATGCTGCTAGGGCCATTGAATACATACACGAACATACAAAAACTCGCTACGTCCATCAAGGTATCAAGACAAGCAACATATTGCTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTAAAACAAATGAGGGAGAAACCACAGCATCCAAAGGTGTAAATGCATACGGATATCTCGCTCCAGAATACTTTAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGCGTTGTTCTTTTTGAGGTTATATCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGACCATTGGCATCTATTATGTTGGCAATTCTTAGGAACTCACCTGATTCCGATAGCATGTCAAGCACAAGAAACCTCGTTGATCCTACTATGATGGATCTGTATCCCCATGACTGTGTACATAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGAGGATCCCGTATTACGCCCTGACATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTGCTGTCTTCTGCTGAGTGGGAAGCAACTCTTGCAGGGAACAGCCAGGTATTCAGCGCTCTTGTTCAGGGAAGATAG 1929 0.4282 MNPSIKQRLRLLLLYVILLRLCCTSSYPTPTNCTDTSRVCTSFLAFKPKPDQTLAVIQSMFDVLPGEITYEDNGWDYLFIRKNCSCDAGMKKFVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNTTHGARKDHGIISLNLFCSCSSGLWNYLMSYVIKNGDSVESLASRFGVSMDSIETVNNGIDNPVPGELYHFKNDTPPVPVPSPSVDGFSADQINQKGRMSHEWIVGGFAVGLALIILSVVVCVFLRSPNCLVEARNNATNSAGKISNKFYVFGNPNLLCGCGKPVDQKQTDGESSSQQITVTTKASSLIPHMLDMDRPVVFSYEEIFYSTDSFSDSNLLGHRAHGSVYYGLLRDQEVAIKRITATKTKELMSEIKVLCKVHHANLVELVGYAASHDDFFLIYEYAQKGSLSCHLHDTQNKGHSSLSWITRVQIALDAARAIEYIHEHTKTRYVHQGIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTASKGVNAYGYLAPEYFSNGLATTKSDVYAFGVVLFEVISGKEAIIQTQGPEKRPLASIMLAILRNSPDSDSMSSTRNLVDPTMMDLYPHDCVHKMAMLAKQCVEEDPVLRPDMKQVVISLSQILLSSAEWEATLAGNSQVFSALVQGR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2565g00021 642 ProSiteProfiles LysM domain profile. 153 200 IPR018392 -
Vium2565g00021 642 Pfam Protein tyrosine and serine/threonine kinase 341 612 IPR001245 GO:0004672|GO:0006468
Vium2565g00021 642 SUPERFAMILY LysM domain 153 190 IPR036779 -
Vium2565g00021 642 Pfam LysM domain 155 188 IPR018392 -
Vium2565g00021 642 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 38 636 IPR044812 GO:0019199|GO:0045087
Vium2565g00021 642 ProSiteProfiles Protein kinase domain profile. 337 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2565g00021 642 Gene3D Phosphorylase Kinase; domain 1 310 408 - -
Vium2565g00021 642 SUPERFAMILY Protein kinase-like (PK-like) 311 614 IPR011009 -
Vium2565g00021 642 Gene3D LysM domain 152 193 IPR036779 -
Vium2565g00021 642 FunFam PTI1-like tyrosine-protein kinase 3 409 628 - -
Vium2565g00021 642 Gene3D Transferase(Phosphotransferase) domain 1 410 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2565g00021 Vium-Chr2565 119300 124248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2565g00021 30 642 Receptor kinase-like Gene Family AT1G51940 57.276 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium2565g00021 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2565g00021 - - vra:106762524 1230.7