Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2565g00020 ATGAATCCTTCAATAAAACAACGGTTGAGGTTGCTACTTTTATATGTAATTCTGCTTCGTCTTTGTTGCACGAGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCTTTCTTGGCCTTTAAGCCTAAACCGGACCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACTTACGAAGACAATGGCTGGGATTATTTATTCATCAGAAAAAACTGTTCTTGTGATGCTGGTATGAAGAAATTTGTGTCTAACACCACACTAACAGTGAAATCCAATGGAGGGTTTGTGCATGATTTGGTGAAGGAAGCCTATGATGGGCTTGCTCTCTTGCCCAACACCACACATGGGGCAAGAAAAGATCATGGTATCATATCACTGAACTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATAAAAAATGGGGACAGTGTTGAGTCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATAATGGCATTGACAATCCTGGTGGCTTCTCTGTTGGTGCTCTCTATTATATACCTTTGAATTCGGTTCCTGGTGAGCTTTATCACTTCAAGAATGACACTCCTCCAGTTCCAGTCCCTTCCCCGTCTGTAGATGGATTTTCAGCCGACCAAATCAACCAGAAGGGTCGTATGTCCCATGAATGGATCGTAGGAGGTTTTGCGGTTGGTCTTGCTCTGATAATATTGAGCGTTGTTGTCTGTGTATTCCTGAGATCGCCTAATTGTTTGGTTGAAGCCAGAAATAATGCAACAAATTCTGCAGGAAAGATCTCTAACAAGTTCTATGTTTTTGGCAATCCAAATTTGTTATGTGGATGTGGCAAACCTGTGGATCAGAAGCAAACTGATGGTGAATCCAGCAGTCAACAAATTACCGTAACAACCAAAGCATCGTCCCTAATACCTCACATGTTGGACATGGATAGGCCTGTAGTTTTTTCATACGAAGAGATTTTTTACTCAACCGATAGTTTCTCTGATTCAAATCTGCTTGGGCACAGAGCACATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAGAGAATTACAGCCACTAAAACTAAAGAACTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGGTCGGCTATGCGGCTAGTCATGATGATTTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCTGCCATTTGCACGATACTCAAAATAAGGGTCATTCATCTCTCTCCTGGATCACAAGGGTCCAAATTGCACTTGATGCTGCTAGGGCCATTGAATACATACACGAACATACAAAAACTCGCTACGTCCATCAAGGTATCAAGACAAGCAACATATTGCTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTAAAACAAATGAGGGAGAAACCACAGCATCCAAAGGTGTAAATGCATACGGATATCTCGCTCCAGAATACTTTAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGCGTTGTTCTTTTTGAGGTTATATCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGACCATTGGCATCTATTATGTTGGCAATTCTTAGGAACTCACCTGATTCCGATAGCATGTCAAGCACAAGAAACCTCGTTGATCCTACTATGATGGATCTGTATCCCCATGACTGTGTACATAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGAGGATCCCGTATTACGCCCTGACATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTGCTGTCTTCTGCTGAGTGGGAAGCAACTCTTGCAGGGAACAGCCAGGTATTCAGCGCTCTTGTTCAGGGAAGATAG 1974 0.4281 MNPSIKQRLRLLLLYVILLRLCCTSSYPTPTNCTDTSRVCTSFLAFKPKPDQTLAVIQSMFDVLPGEITYEDNGWDYLFIRKNCSCDAGMKKFVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNTTHGARKDHGIISLNLFCSCSSGLWNYLMSYVIKNGDSVESLASRFGVSMDSIETVNNGIDNPGGFSVGALYYIPLNSVPGELYHFKNDTPPVPVPSPSVDGFSADQINQKGRMSHEWIVGGFAVGLALIILSVVVCVFLRSPNCLVEARNNATNSAGKISNKFYVFGNPNLLCGCGKPVDQKQTDGESSSQQITVTTKASSLIPHMLDMDRPVVFSYEEIFYSTDSFSDSNLLGHRAHGSVYYGLLRDQEVAIKRITATKTKELMSEIKVLCKVHHANLVELVGYAASHDDFFLIYEYAQKGSLSCHLHDTQNKGHSSLSWITRVQIALDAARAIEYIHEHTKTRYVHQGIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTASKGVNAYGYLAPEYFSNGLATTKSDVYAFGVVLFEVISGKEAIIQTQGPEKRPLASIMLAILRNSPDSDSMSSTRNLVDPTMMDLYPHDCVHKMAMLAKQCVEEDPVLRPDMKQVVISLSQILLSSAEWEATLAGNSQVFSALVQGR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2565g00020 657 ProSiteProfiles LysM domain profile. 153 198 IPR018392 -
Vium2565g00020 657 SUPERFAMILY Protein kinase-like (PK-like) 326 629 IPR011009 -
Vium2565g00020 657 Gene3D Phosphorylase Kinase; domain 1 325 423 - -
Vium2565g00020 657 Gene3D Transferase(Phosphotransferase) domain 1 425 648 - -
Vium2565g00020 657 FunFam PTI1-like tyrosine-protein kinase 3 424 643 - -
Vium2565g00020 657 SUPERFAMILY LysM domain 153 199 IPR036779 -
Vium2565g00020 657 ProSiteProfiles Protein kinase domain profile. 352 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2565g00020 657 Pfam Protein tyrosine and serine/threonine kinase 356 627 IPR001245 GO:0004672|GO:0006468
Vium2565g00020 657 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 38 651 IPR044812 GO:0019199|GO:0045087
Vium2565g00020 657 SMART LysM_2 154 199 IPR018392 -
Vium2565g00020 657 Gene3D LysM domain 152 199 IPR036779 -
Vium2565g00020 657 Pfam LysM domain 155 188 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2565g00020 Vium-Chr2565 119300 124248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2565g00020 30 657 Receptor kinase-like Gene Family AT1G51940 59.196 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium2565g00020 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2565g00020 - - vra:106762524 1268.83