Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2565g00017 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGCGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCCTCAGAGGAGAGAAAGCTCGAACTGAGGCTAGGTCCACCTGGTGAGGACTGGACTCTCAGTGGTAAAATGAAGAACGCCAACTCAGAAAGAGAGGAGTCACTTCTCTCTCTTGGGTGCTTCCCTTCTTCCAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACAACAAGAGTAACAACAAAGCCTCTGCACCTTTTCTTCAGTTCCCATCAGCTGCACCCGTGATGGGAAAAGATGCTTCACAAAAGTGCTGTTCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGTGATAGCAAAGTGTTCTCTCCCTCTCCTGCAAATACAGCTGTGTCACAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCGGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCTAGCAGCAGCGCTTCTAAGCCATCAACTGAATCACAGCCTGAGCAGCACAACAAGGTCGCTGGTAAAAAACCTGTTGATAACTATGCCGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGATGAAGAGAAAGCAATCACGGGTTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTGAGAGTGTTAAAGAGTTCAGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATATCTCTTGACTCAGCAATGAAATAA 1032 0.469 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWTLSGKMKNANSEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHNKSNNKASAPFLQFPSAAPVMGKDASQKCCSKVVELQNGCGGGDSKVFSPSPANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPSTESQPEQHNKVAGKKPVDNYAGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKISLDSAMK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2565g00017 343 FunFam Auxin-responsive protein 212 333 - -
Vium2565g00017 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 324 IPR003311 GO:0005634|GO:0006355
Vium2565g00017 343 SUPERFAMILY CAD & PB1 domains 209 318 - -
Vium2565g00017 343 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Vium2565g00017 343 Pfam AUX/IAA family 38 326 IPR033389 -
Vium2565g00017 343 MobiDBLite consensus disorder prediction 150 209 - -
Vium2565g00017 343 MobiDBLite consensus disorder prediction 22 43 - -
Vium2565g00017 343 MobiDBLite consensus disorder prediction 181 200 - -
Vium2565g00017 343 MobiDBLite consensus disorder prediction 150 167 - -
Vium2565g00017 343 MobiDBLite consensus disorder prediction 1 62 - -
Vium2565g00017 343 Gene3D - 212 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2565g00017 Vium-Chr2565 94676 98467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2565g00017 220 332 B3 DNA Binding Superfamily AT4G23980 33.628 6.99e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium2565g00017 AUX_IAA 3.8e-73 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2565g00017 K14484 - gmx:100804593 530.791