Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2565g00015 ATGGGCAAAGCTACTAGATGGTTGAAGGGGTTGCTGGGAATGAAGAAAGAGAGAGACTGCTGTGGCTATTCGGGCTCGCTGGGAACTGACAAGAGGGAAAAGAAACAATCGGAGAAGAATGAAGAGAGTCACATTACACCATCTACCATTGATCATACTAAGAGCAGATTCTATGTTGCCAAAAAAGAGGGGGTGAAGAACAAACAGGTCACTGGTGTGGCAGTTGAGAGATCAAGAAGGAGTGGCAGAAACACCTTGATGATTGGAAGCAAGGAGGGCTGGGCTGCTGTGTCAATACAATCCATTTTCAGAGGTTATTTGGCGCGAAAAGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAGGCTCTTGTCAGAGGGTATCTAGTTCGGAAAAGGGTTGCTGCAACTCTTCACAGTGTGCAAGCAATGATGAGAGCTCAAGCTGTTGCTCGATCGGTTCGAGCTCGTCGATCCATGGACAAGGAGAACAGATTTCACCCAGAATCTCCTTCCAGAAAATATGTGCAACAGTTTGATGCAACAAGAAATTATCAATCTCACAATAGAAGGCCACGCATATACTGTAAGGCACCATCGAATGGATTTGACGAGAGCTCAAAAGTTTTTGAGTTTGACAATCGCATGGCCCATTCAAGATCTCGGAGCATTAACACTGCAATGTCTGAATGTGGAGAAGAGCTGCATTATCAAGCAATGTCCTCCTCTCTTCCATGTCAAGTTCAAGGTCGAATCTCGCTTCATGAAAGGCGTCAGCACCCTCAAGAGTTTGAATGGTTCTTCAATCTTGACGAAGGTAACAAGTTCTCCTCAGCACACAACACCCCTCGTCTATCAAAATGTACGACACCAGCTACTCCATTGAAGAGTGTTTGTGGTGACACCTTCAGGAGCTGCTCCGATTTCCCTAACTACATGGCCAACACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACACAGAAAAAGGTTTTCGATCAATGAAATCATGGCAGCCAGAAACAGTGTCAGTGGTGTTGGAAAGCAGTGGTTATCCAACCCAAAAACTCAAGATTGCTATTTCTTTGACAAGGTTATTTAG 1125 0.4489 MGKATRWLKGLLGMKKERDCCGYSGSLGTDKREKKQSEKNEESHITPSTIDHTKSRFYVAKKEGVKNKQVTGVAVERSRRSGRNTLMIGSKEGWAAVSIQSIFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMMRAQAVARSVRARRSMDKENRFHPESPSRKYVQQFDATRNYQSHNRRPRIYCKAPSNGFDESSKVFEFDNRMAHSRSRSINTAMSECGEELHYQAMSSSLPCQVQGRISLHERRQHPQEFEWFFNLDEGNKFSSAHNTPRLSKCTTPATPLKSVCGDTFRSCSDFPNYMANTHSSKAKLRSHSAPKQRPEHRKRFSINEIMAARNSVSGVGKQWLSNPKTQDCYFFDKVI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2565g00015 374 PANTHER IQ-DOMAIN 5-RELATED 1 341 - -
Vium2565g00015 374 ProSiteProfiles IQ motif profile. 95 120 IPR000048 GO:0005515
Vium2565g00015 374 SMART iq_5 114 135 IPR000048 GO:0005515
Vium2565g00015 374 SMART iq_5 91 113 IPR000048 GO:0005515
Vium2565g00015 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 135 IPR027417 -
Vium2565g00015 374 MobiDBLite consensus disorder prediction 22 48 - -
Vium2565g00015 374 Pfam IQ calmodulin-binding motif 119 133 IPR000048 GO:0005515
Vium2565g00015 374 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Vium2565g00015 374 Pfam Protein of unknown function (DUF4005) 277 352 IPR025064 -
Vium2565g00015 374 Gene3D - 92 135 - -
Vium2565g00015 374 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Vium2565g00015 374 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2565g00015 Vium-Chr2565 78473 80387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2565g00015 1 354 IQD Protein Family AT3G16490 42.347 4.52e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2565g00015 - - pvu:PHAVU_005G165500g 587.03