Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2565g00014 ATGGGCAAAGCTACTAGATGGTTGAAGGGGTTGCTGGGAATGAAGAAAGAGAGAGACTGCTGTGGCTATTCGGGCTCGCTGGGAACTGACAAGAGGGAAAAGAAACAATCGGAGAAGAATGAAGAGAGTCACATTACACCATCTACCATTGATCATACTAAGAGCAGATTCTATGTTGCCAAAAAAGAGGGGGTGAAGAACAAACAGGTCACTGGTGTGGCAGTTGAGAGATCAAGAAGGAGTGGCAGAAACACCTTGATGATTGGAAGCAAGGAGGGCTGGGCTGCTGTGTCAATACAATCCATTTTCAGAGGTTATTTGGCGCGAAAAGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAGGCTCTTGTCAGAGGGTATCTAGTTCGGAAAAGGGTTGCTGCAACTCTTCACAGTGTGCAAGCAATGATGAGAGCTCAAGCTGTTGCTCGATCGGTTCGAGCTCGTCGATCCATGGACAAGGAGAACAGATTTCACCCAGAATCTCCTTCCAGAAAATATGTGCAGCAACAGTTTGATGCAACAAGAAATTATCAATCTCACAATAGAAGGCCACGCATATACTGTAAGGCACCATCGAATGGATTTGACGAGAGCTCAAAAGTTTTTGAGTTTGACAATCGCATGGCCCATTCAAGATCTCGGAGCATTAACACTGCAATGTCTGAATGTGGAGAAGAGCTGCATTATCAAGCAATGTCCTCCTCTCTTCCATGTCAAGTTCAAGGTCGAATCTCGCTTCATGAAAGGCGTCAGCACCCTCAAGAGTTTGAATGGTTCTTCAATCTTGACGAAGGTAACAAGTTCTCCTCAGCACACAACACCCCTCGTCTATCAAAATGTACGACACCAGCTACTCCATTGAAGAGTGTTTGTGGTGACACCTTCAGGAGCTGCTCCGATTTCCCTAACTACATGGCCAACACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACACAGAAAAAGGTTTTCGATCAATGAAATCATGGCAGCCAGAAACAGTGTCAGTGGTGTTGGAAAGCAGTGGTTATCCAACCCAAAAACTCAAGATTGCTATTTCTTTGACAAGGTTATTTAG 1128 0.4495 MGKATRWLKGLLGMKKERDCCGYSGSLGTDKREKKQSEKNEESHITPSTIDHTKSRFYVAKKEGVKNKQVTGVAVERSRRSGRNTLMIGSKEGWAAVSIQSIFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMMRAQAVARSVRARRSMDKENRFHPESPSRKYVQQQFDATRNYQSHNRRPRIYCKAPSNGFDESSKVFEFDNRMAHSRSRSINTAMSECGEELHYQAMSSSLPCQVQGRISLHERRQHPQEFEWFFNLDEGNKFSSAHNTPRLSKCTTPATPLKSVCGDTFRSCSDFPNYMANTHSSKAKLRSHSAPKQRPEHRKRFSINEIMAARNSVSGVGKQWLSNPKTQDCYFFDKVI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2565g00014 375 Gene3D - 93 135 - -
Vium2565g00014 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 135 IPR027417 -
Vium2565g00014 375 ProSiteProfiles IQ motif profile. 95 120 IPR000048 GO:0005515
Vium2565g00014 375 SMART iq_5 114 135 IPR000048 GO:0005515
Vium2565g00014 375 SMART iq_5 91 113 IPR000048 GO:0005515
Vium2565g00014 375 MobiDBLite consensus disorder prediction 23 48 - -
Vium2565g00014 375 PANTHER IQ-DOMAIN 5-RELATED 1 342 - -
Vium2565g00014 375 Pfam IQ calmodulin-binding motif 119 133 IPR000048 GO:0005515
Vium2565g00014 375 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Vium2565g00014 375 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Vium2565g00014 375 MobiDBLite consensus disorder prediction 28 48 - -
Vium2565g00014 375 Pfam Protein of unknown function (DUF4005) 278 353 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2565g00014 Vium-Chr2565 78473 81307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2565g00014 1 355 IQD Protein Family AT3G16490 41.985 2.41e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2565g00014 - - pvu:PHAVU_005G165500g 582.408