LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2565g00002	ATGGATGGAAAACGGAGATGCCATTGGGCTTGGATCTTCACCTTATGGTGTGTCCTTGCATATACCATTTTAGAATTTTCAGGAAAGGCCACAGAGAACAACTCTATGCATCACAAACAAGGAAGAAGGAAACTGGATGATGTCAGTGGTTCTATTTCCATTGACTGTGGGATACCAGAAGAAGTGGCCTACACTGATGAGAAAACTCAGATTCATTACACTTCAGATGCACAGTTTATTGGCACTGGAACAAGAAAAAATATACCCCTCAAGCTCACTTCTGAAATACCCCAAGGAGTTTTCACTACTGTGAGAAGCTTCCCCGAGGATAAAAGAAACTGTTACACACTACGACATCCAGAAGGCGGAAATACTATATACTTGATAAGAGCTTCTTTTATGTATGGAAACTATGATGACTTGAACATGCTGCCACAATTTCATCTCTATGTTGGGGTCAATTTTTGGGACTCTGTGAAGTTTGAAAATGCCACTCATGTTGTAATCAAAGAGATTTTACATGTGCCGTCTTTGGATGAATTGTATATTTGTTTATTGAATACTGATATGGGAACTCCTTTTATATCAGCACTGGAGGTGAGGCACTTTGATCATTCCAGTTATAGAACAGACTCTAAACTCTTATCCCTATACAGACGTTTTGACATTGGATCAACAACCAATGAAATAGTGAGATTTGAAGAAGATACTTATGATCGAATGTGGTATCCTTACAACTTACCAGATTCTACACCACTCAGTACTTCCTTCAGCATTGACTCCTTGAACCATACTGCTTATCACCTTCCAACAGCAGTAATGAAAACTGCTGTGAGAGCAACAAATGAAAATGATTCCCTGGAATTTGATTTTGACACTGGGCATCCTACTTCGGATTCATATGTCTATATGCACTTTGCTGAAATCGAAGATCTTAAGGAAAACGAAAGCAGGGTATTCGACATTACACTGAATGGACAAATTTTGTCTGAATCTGTTTCTCCCAAGTATTTGCTGTCAACTACGATAGAAAGTAAACAGGCCATTAGAGGAAGTAAGCTCAAGTTTTCTATGTACAAGAAACCAAATTCCACCCATCCTCCCATTCTAAATGCGATGGAGATTTATATTGTTAAAGAATTCTTGCAATCACCCACAGATCAAGAAGATGTTAAGGCTATCATGTCCATCAAATCATATTACAAGTTGATGTCGTCGTTGGGTAAATCTTGGCAAGGAGACCCTTGTGCACCGTTGAAATACTCTTGGAATGGTATCAACTGCAGCAATAATGGATATAATCCACCCGCAATAACTGCATTAAACCTAGCCTCCAGTGGATTAGATGGCCCGATAATTGATTCTTTTTTGGAGCTCAAATTCTTAGAATTCTTGGATTTATCAAACAATAGCTTAACAGGACCACTGCCTGATTTTTCAAAGCTGCAGTACTTAAAAACTCTCAATTTATCAGGGAACAGACTCTCGGGTGAAATTCCTCCAGTTCTCTTGGAAAGATCAAATAACGGTTCCCTTATGTTGAGTGTGGATCTGGATCTCTGCCCGATAGGGCCATGTGAAGAGAAGAAAAACAATATTGTTCCACTTGTGGCAGGCATTCTTTCAGCTGTGATCTTTTTCATTGTATTGGGTATTGTGCTGACTATCATTTGGAGGAGACGCAACAAAAACCCAGCCTCAAAGCAAGCTGTGAGATCAAACGAAGAAGTTGTGCTGAAGACAAATAATAATCAGTTCTCGTATTCTCAGATAATGACTATAACCAATAACTTTGACAAAACAATTGGGAAGGGAGGGTGTGGAATTGTCTACCTTGGTTACTTACAAGATGGCACACAAGCTGCTGTCAAAATGCTCTCGTCTAAATCTCCTCAAGGATCTCAGCAGTTTCAGACAGAGGCTCAACTCTTAATGCGTGTTCATCATAAGAACTTAGCTTCCTTTCTTGGATACTGTAATGAAGTCGGACGCACAGCCATCATTTACGAATACATGACTAATGGTAACTTGGAAGAGTATCTTTCAGATCTTAAAAGAGAACCATTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGGTATCGAGTACTTGCATCATGGCTGCAAGCCACCAATAGTCCACAGAGACATAAAGACTGCAAACATTTTACTGAATGAGAAAATGCAAGCAAAAGTTGCTGATTTTGGTTTCTCAAAATTTTTCTCAGCTGAAAATGAAAGTTACGTATCAACTGTAGTTATTGGCACTGTTGGATATCTTGATCCAGAATACTACATATCCAGCAGGCTGACTGAAAAAAGCGATGTTTATAGTTTTGGCATTGTACTTTTGGAGCTAATTACTGGGCAGCCAGCCATAATAAAAGGTCATCAGAACACTCACATTGTGCAATGGGTTAACCACTTTCTTGAAAGAGGAGATATACAACAAATTGTTGATCCAAAGATGCAAGGAGATTTTGACTTTGGTTCTATGTGGAAGGCCTTGGAGGCAGCAGTATCTTGTGTGCCTTCAATCTCTATCCAAAGGCCATCAATGAATCACATTGTCTCTGAACTGAAAGAGTCCTTAAAAATGGAAGCAACTCGAGAACAAGAAGGCATCAACTCGATTGAAATGAACGTTGTTGATCTTGAAGCTGATTGGGGCCCAGATGCAAGATAG	2697	0.3953	MDGKRRCHWAWIFTLWCVLAYTILEFSGKATENNSMHHKQGRRKLDDVSGSISIDCGIPEEVAYTDEKTQIHYTSDAQFIGTGTRKNIPLKLTSEIPQGVFTTVRSFPEDKRNCYTLRHPEGGNTIYLIRASFMYGNYDDLNMLPQFHLYVGVNFWDSVKFENATHVVIKEILHVPSLDELYICLLNTDMGTPFISALEVRHFDHSSYRTDSKLLSLYRRFDIGSTTNEIVRFEEDTYDRMWYPYNLPDSTPLSTSFSIDSLNHTAYHLPTAVMKTAVRATNENDSLEFDFDTGHPTSDSYVYMHFAEIEDLKENESRVFDITLNGQILSESVSPKYLLSTTIESKQAIRGSKLKFSMYKKPNSTHPPILNAMEIYIVKEFLQSPTDQEDVKAIMSIKSYYKLMSSLGKSWQGDPCAPLKYSWNGINCSNNGYNPPAITALNLASSGLDGPIIDSFLELKFLEFLDLSNNSLTGPLPDFSKLQYLKTLNLSGNRLSGEIPPVLLERSNNGSLMLSVDLDLCPIGPCEEKKNNIVPLVAGILSAVIFFIVLGIVLTIIWRRRNKNPASKQAVRSNEEVVLKTNNNQFSYSQIMTITNNFDKTIGKGGCGIVYLGYLQDGTQAAVKMLSSKSPQGSQQFQTEAQLLMRVHHKNLASFLGYCNEVGRTAIIYEYMTNGNLEEYLSDLKREPLSWRQRIQIAVDAAQGIEYLHHGCKPPIVHRDIKTANILLNEKMQAKVADFGFSKFFSAENESYVSTVVIGTVGYLDPEYYISSRLTEKSDVYSFGIVLLELITGQPAIIKGHQNTHIVQWVNHFLERGDIQQIVDPKMQGDFDFGSMWKALEAAVSCVPSISIQRPSMNHIVSELKESLKMEATREQEGINSIEMNVVDLEADWGPDAR	898

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2565g00002	898	SUPERFAMILY	L domain-like	387	508	-	-
	Vium2565g00002	898	Pfam	Malectin-like domain	54	377	IPR024788	-
	Vium2565g00002	898	Gene3D	Ribonuclease Inhibitor	387	533	IPR032675	-
	Vium2565g00002	898	PRINTS	Leucine-rich repeat signature	462	475	-	-
	Vium2565g00002	898	PRINTS	Leucine-rich repeat signature	482	495	-	-
	Vium2565g00002	898	SUPERFAMILY	Protein kinase-like (PK-like)	576	864	IPR011009	-
	Vium2565g00002	898	ProSiteProfiles	Protein kinase domain profile.	596	898	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2565g00002	898	CDD	STKc_IRAK	602	866	-	-
	Vium2565g00002	898	SMART	serkin_6	596	868	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2565g00002	898	Gene3D	-	219	378	-	-
	Vium2565g00002	898	FunFam	Leucine-rich repeat receptor-like protein kinase	572	671	-	-
	Vium2565g00002	898	Pfam	Protein tyrosine and serine/threonine kinase	598	811	IPR001245	GO:0004672\|GO:0006468
	Vium2565g00002	898	Gene3D	Transferase(Phosphotransferase) domain 1	672	891	-	-
	Vium2565g00002	898	Gene3D	Phosphorylase Kinase; domain 1	578	671	-	-
	Vium2565g00002	898	PANTHER	OS07G0107800 PROTEIN-RELATED	52	868	-	-
	Vium2565g00002	898	FunFam	Leucine-rich repeat receptor-like kinase	389	517	-	-
	Vium2565g00002	898	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	672	877	-	-
	Vium2565g00002	898	ProSiteProfiles	Leucine-rich repeat profile.	461	483	IPR001611	GO:0005515
	Vium2565g00002	898	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	716	728	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2565g00002	Vium-Chr2565	11564	16142	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2565g00002	44	898	Receptor kinase-like Gene Family	AT2G19210	46.375	0.0	780

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Vium2565g00002		Malectin_like	1.8e-107	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2565g00002	-		-	gmx:100791717	1522.68