Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2565g00001 ATGTGGATGAGTTTCTATGTTGCTGTTTTAGCTGTTCTACTTATTCAAGCTCATGCTCAACCAGAATTCATCAGCATAAGTTGCGGATCTGAAGATGGTTATACTGTCCCGGCACTACAAATAAATTACGTTTCGGATGTGGGTTTCATAAATACTGGTGTGAGTGGGAAAATATCATCTGAAGAGAACAGCAGATACAATACTCAACGACAACTATGGACGCTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAACGTCACAAGAGCCTCTAAGTATCTCATACGCACTACTTTTCTGTACGGAAATTATGATGGCCGAAATAAATTACCACAGTTTGATCTTCTTATCGGACCTAACCACTGGAGTACAGTCATGATACAAAATGAATCATCTGCCCAAACCAATGAGATCATTCATGTACCTTCAATGGATTATGTGCAAATCTGTCTGGTTGACACACACAATGACATACCATTTATAACAACCATAGAATTCAGGACTTTGAATAATGATACATACGTCACTCCATTCGGATCATTGGAACTTTACAATTACCGGCGCTGCGATTTGGGTTCAAACCAAAGCTACAGGTACCCGGTTGATGTTTATGATCGTGTCTGGTATGGTCCCTATGACCCCTGTAACTTCGGCGAAAATTGGAAACCACTAAGTGCCTCCATTTCTGATGATTCTTTAAATCAGACGGATTACAAGGAGGAAGCTACTATCATGGGCACCGCAGTTGAACCAGAAAATGATAGTGCTCCGTTGGTAATAAGCTGGAAGCCACAAAATGAAATTGACAAATTTTATGTGTACATGTACTTCACGGAAATTCATGTGTTAACCACGAATGAGACAAGACTATTCAACATCATGCTGAACGATGAATCATTAGTTCAAAATTTTTCTCCGCGGTACCATATTGCCCATACCATAAATCCGACGGCAGCCATCAGTGGGAAAGAAATTAAATTTTCCCTGGAGAGGACTGAAACTTCAACCCTCCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGACTCACAGAACCCAGAAACATTCCAAGGAGATGTTGATGCAATTACAAGCATTAAGTCTGCCTATGGAGTGAAAAGGGATTGGGAAGGTGATCCATGCTCCCCTGCAGCCTACTTGTGGGATGGTCTCAACTGTACTTATCTCGGCAATGAGTTCCCAAGAATCACAGCTTTGAATTTATCTTCGAGTGGATTGTCAGGAAAGATTGACTCTTCTATCTCAAACCTCACCATGTTGGAGAAGCTGGATTTATCTAACAATAACTTAAATGGTGATGTTCCTGATTTTCTGTCTCAATTACAACACTTGAAGATCTTAAACTTGGAGAAGAATGACCTCTCCGGTTCAATTCCCTCTGCACTTGTTGAAAAATCACGCAAAGGTTCTCTTTCACTAAGTGTGGGTGAAAATCCATATTTATGTGAATCTGGTCAATGCAACGAGAAGGAAAAGAAAAATACTGTCATACCCATAGTGGCATCAATATGTGGGGTTCTAATTCTTCTAATAGCCGTTGCTATATTGTGGATCATTAAAAGGAAAAAATCAAAAGTCGAAAAATTTACAGATTCGGTGGCACTAAATCATCAGAGTGATTTTTCAGAGAAATCCACAGAAAAGGATAATTCGTTCCAGCAAGGCAAAAGTCAAATGTATTCATACTATGATGTCCTTTATATCACTAACAATTTCAAAAGAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTGGGTTTTATCGATGACACTCCAGTTGCAGTGAAAATGCTTTCCTCATCAGCAGTTCATGGTTATCAACAATTTCAAGCAGAGGTTAAACTTCTACTCAGAGTTCATCACAAAAATCTGACATCCCTTATTGGTTACTGTAACGAAGGAACCAATAAGGGCCTTATATATGAATACATGGCTAATGGGAACTTACATGAACATCTCTCAGGTAAATATAGCGAATCACCATTATTGAGCTGGAAGGACAGACTTCGTGTAGCACTGGATGCAGCCTTAGGATTGGAATATCTGCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGATGTGAAATCTACAAACATCTTGTTGGACGAACACTTCCAAGCAAAGTTATCTGATTTTGGTCTATCCAAAGTTGTCCCAGATGATGGGGGGTCTTATGTGTCAACTGTTGTTGCTGGCACTTTCGGTTACCTGGACCCTCACTACCACTCTTCCAATAGGTTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAATCAACCANAATCTAATATCAGGATTGGAATATCTGCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGATATGATGGGGGGTCTTATGTGTCAACTGTTGTTGCTGGCACTTTCGGTTACCTGGACCCTCACTACCACTCTTCCAATAGGTTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAATCAACCAGTAATGGCAGGGAATGAAGAAACGGGTCACATAAGTGAACGAGTTAACATGATGATATCAAAAGGAGATATCAGAGCCATAGTTGACTCAAGCTTAGAAGGAAATTTTGACATAAACTCAGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCCAACGAAAGGCCAATGATGAGTGCGGTAGTGATTGAACTACAGGAGGCTTTAGCGACCGAATTAGCTAGAACAAACCATGACAGTGGTGCTTCTATTGCATCGGTCAGCGTGAAAGTAGACACCGGATATATGCCCTTAGCTAG 2867 0.4004 MWMSFYVAVLAVLLIQAHAQPEFISISCGSEDGYTVPALQINYVSDVGFINTGVSGKISSEENSRYNTQRQLWTLRSFPEGKRNCYKINVTRASKYLIRTTFLYGNYDGRNKLPQFDLLIGPNHWSTVMIQNESSAQTNEIIHVPSMDYVQICLVDTHNDIPFITTIEFRTLNNDTYVTPFGSLELYNYRRCDLGSNQSYRYPVDVYDRVWYGPYDPCNFGENWKPLSASISDDSLNQTDYKEEATIMGTAVEPENDSAPLVISWKPQNEIDKFYVYMYFTEIHVLTTNETRLFNIMLNDESLVQNFSPRYHIAHTINPTAAISGKEIKFSLERTETSTLPPIISAIEIYRVIDSQNPETFQGDVDAITSIKSAYGVKRDWEGDPCSPAAYLWDGLNCTYLGNEFPRITALNLSSSGLSGKIDSSISNLTMLEKLDLSNNNLNGDVPDFLSQLQHLKILNLEKNDLSGSIPSALVEKSRKGSLSLSVGENPYLCESGQCNEKEKKNTVIPIVASICGVLILLIAVAILWIIKRKKSKVEKFTDSVALNHQSDFSEKSTEKDNSFQQGKSQMYSYYDVLYITNNFKRIIGKGGFGTVYLGFIDDTPVAVKMLSSSAVHGYQQFQAEVKLLLRVHHKNLTSLIGYCNEGTNKGLIYEYMANGNLHEHLSGKYSESPLLSWKDRLRVALDAALGLEYLQTGCKPPIIHRDVKSTNILLDEHFQAKLSDFGLSKVVPDDGGSYVSTVVAGTFGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQPXSNIRIGISANWLQASYNPQRYDGGSYVSTVVAGTFGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQPVMAGNEETGHISERVNMMISKGDIRAIVDSSLEGNFDINSAWKAVEIAMACVSPNPNERPMMSAVVIELQEALATELARTNHDSGASIASVSVKVDTGYMPLA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2565g00001 955 FunFam Leucine-rich repeat receptor-like protein kinase 556 656 - -
Vium2565g00001 955 Gene3D Ribonuclease Inhibitor 365 485 IPR032675 -
Vium2565g00001 955 FunFam Leucine-rich repeat receptor-like kinase 363 496 - -
Vium2565g00001 955 SUPERFAMILY Protein kinase-like (PK-like) 807 921 IPR011009 -
Vium2565g00001 955 SUPERFAMILY Protein kinase-like (PK-like) 563 783 IPR011009 -
Vium2565g00001 955 ProSiteProfiles Protein kinase domain profile. 582 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2565g00001 955 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 657 787 - -
Vium2565g00001 955 Gene3D Phosphorylase Kinase; domain 1 553 656 - -
Vium2565g00001 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Vium2565g00001 955 ProSitePatterns Protein kinases ATP-binding region signature. 588 609 IPR017441 GO:0005524
Vium2565g00001 955 Gene3D Transferase(Phosphotransferase) domain 1 657 799 - -
Vium2565g00001 955 ProSiteProfiles Leucine-rich repeat profile. 431 453 IPR001611 GO:0005515
Vium2565g00001 955 Pfam Malectin-like domain 26 352 IPR024788 -
Vium2565g00001 955 Pfam Protein kinase domain 811 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2565g00001 955 Gene3D Transferase(Phosphotransferase) domain 1 800 945 - -
Vium2565g00001 955 SMART serkin_6 582 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2565g00001 955 Pfam Protein tyrosine and serine/threonine kinase 584 786 IPR001245 GO:0004672|GO:0006468
Vium2565g00001 955 SUPERFAMILY L domain-like 391 476 - -
Vium2565g00001 955 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Vium2565g00001 955 PANTHER OS07G0107800 PROTEIN-RELATED 24 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2565g00001 Vium-Chr2565 1102 5952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2565g00001 808 931 Receptor kinase-like Gene Family AT1G51800 56.452 4.07e-39 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium2565g00001 Malectin_like 8.6e-101 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2565g00001 - - vum:124830965 1911.35