Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2564g00004 ATGGGAGAGGGAGAGAACATAGAAGTGGAAACAGAAACAGAATCCGAAGCATCATCGTCCTGGAACCTCGGAAAACACACTCAGATAATCGAGCTGTCGGAGAAGTTGTTGGACGGGAACCTCAGCGCCAAGATTGAGGCTGCTAGGGAGATAAGGAAGATGGTTCGGAAATCATCGCCCTCGTCGAAGATACGTGCGAAGCTCGCCGCAGCGGGTGTGATTGAACCCCTCGTGCTGATGCTGTCTTCTTCCAACATCGAAGCTCGCCAATCCTCTCTTCTCGCTCTCCTCAACCTCGCTGTTCGCAATGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAGTAGCGGTATACGAGAATTAGCTACAGCTGCAGTCTTGTCACTCTCAGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTTTCCTTGTTCAGATTCTCAAATCTGGAACTGTTCAAGGCAAAGTTGATGCTGTTACAGCACTCCATAATCTTTCTACCAGCAATGAGAATTCCATTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTGATCAACCTTCTCAAAGAGTGCAAGAAGTATTCCAAGTTTGCGGAAAAAGCCACATCACTGCTTGAAATCCTGTCCAACTCTGAAGAAGGGCGAACTGCAATCTCAATTGCAGATGGTGGAATCTTAACCCTAGTTGAGACAGTTGAAGACGGATCACTTGTCAGCACAGAACATGCTGTAGGAGCTCTGCTATCTTTATGCCGAAGCTGCCGGGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGCTACGTCTGACCGTGGAGGGCACGGCTGAAGCTCAAGATAGAGCTCGTGTGCTTCTGGATTTGCTCAGAGATTCTTCCCCAGAAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGAGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACAGTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACATAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA 1137 0.4741 MGEGENIEVETETESEASSSWNLGKHTQIIELSEKLLDGNLSAKIEAAREIRKMVRKSSPSSKIRAKLAAAGVIEPLVLMLSSSNIEARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMKSSGIRELATAAVLSLSAAASNKPIIAASGAAPFLVQILKSGTVQGKVDAVTALHNLSTSNENSIELLDPSAVFPLINLLKECKKYSKFAEKATSLLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGALLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSSPEKRLTSSVLEKIVYDIAERVDGADKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSIPST 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2564g00004 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 240 IPR000225 GO:0005515
Vium2564g00004 378 Pfam Armadillo/beta-catenin-like repeat 103 142 IPR000225 GO:0005515
Vium2564g00004 378 MobiDBLite consensus disorder prediction 1 20 - -
Vium2564g00004 378 SUPERFAMILY ARM repeat 34 336 IPR016024 -
Vium2564g00004 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
Vium2564g00004 378 FunFam U-box domain-containing protein 4 5 370 - -
Vium2564g00004 378 Gene3D - 28 152 IPR011989 -
Vium2564g00004 378 SMART arm_5 185 227 IPR000225 GO:0005515
Vium2564g00004 378 SMART arm_5 228 269 IPR000225 GO:0005515
Vium2564g00004 378 SMART arm_5 102 143 IPR000225 GO:0005515
Vium2564g00004 378 SMART arm_5 144 184 IPR000225 GO:0005515
Vium2564g00004 378 SMART arm_5 61 101 IPR000225 GO:0005515
Vium2564g00004 378 Gene3D - 153 367 IPR011989 -
Vium2564g00004 378 PANTHER U BOX DOMAIN-CONTAINING 28 312 - -
Vium2564g00004 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Vium2564g00004 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2564g00004 Vium-Chr2564 93708 102625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2564g00004 27 312 U-box Gene Family AT2G23140 36.364 1.63e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2564g00004 K08332 - gmx:100782472 620.542