Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2562g00007 ATGTCTATCACTGCCACTGCGTTCAAGTCTCTCACCATGGCCGATTCGTGCCTCCTCTCTTCTCCCTCATCCCTCTTTCACAACATAACCAAATCCCATGTTTTCTCACCTCCTTCCAAACCCCTTACACTCCAATTCTCATGCCTCAATTCCTCCCCCTCGCTCTCTCTCTCCCTCGCTGCACGAACCCACCGTTACCCCGTCCTTACCCACGTCGCCCAAACTTCTGATTGGGCCCAGCAAGAAGACAACACCGCCACCTTACCGGACCAAGAGGAAGAACAAGAAGGGGGTGGCCTCCTCGATTGGGAGGTCGCGGGCGAAGGCGCGGAAGATGAGGGTTTCGTGGAACCACCGGAAGAGGCCAAGCTCTTCGTCGGGAACTTGCCTTACGACGTTGATAGTCAGAAATTGGCCATGCTATTCGAACAAGCCGGAGTCGTCGAAATCGCCGAGGTGATTTATGCCAGGGACACTGACCGGAGTCGTGGATTTGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGAGAAATTCAATAGCTATGATTATGATGGAAGACTGTTGACTGTTAATAAGGCTTCTCCGAGAGGAGCTCAACCTGAACGCCGACCTCGTCGTAACTTTGAGCCTGCCTTTTCTGTCTATGTTGGTAATTTGCCGTGGGATGTTGATGGTACCAGGTTGGAGCAAGTTTTCAGCGAGCATGGTAAGGTTTTGAGCGCTAGGGTAGTCTATGACAGGGAGAGTGGTCGTTCACGTGGCTTTGGCTTTGTCACAATGTCGGATGAGTCAGAAATGAATGATGCTGTTACTGCTCTTGATGGTCAGACTTTGGACGGAAGGACAATTAGGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTTTTGA 912 0.5143 MSITATAFKSLTMADSCLLSSPSSLFHNITKSHVFSPPSKPLTLQFSCLNSSPSLSLSLAARTHRYPVLTHVAQTSDWAQQEDNTATLPDQEEEQEGGGLLDWEVAGEGAEDEGFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGVVEIAEVIYARDTDRSRGFGFVTMSTVEEAEKAVEKFNSYDYDGRLLTVNKASPRGAQPERRPRRNFEPAFSVYVGNLPWDVDGTRLEQVFSEHGKVLSARVVYDRESGRSRGFGFVTMSDESEMNDAVTALDGQTLDGRTIRVNVAEDRPPRRSSF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2562g00007 303 SUPERFAMILY RNA-binding domain, RBD 209 301 IPR035979 GO:0003676
Vium2562g00007 303 CDD RRM2_NsCP33_like 219 293 - -
Vium2562g00007 303 Gene3D - 69 207 IPR012677 -
Vium2562g00007 303 MobiDBLite consensus disorder prediction 77 97 - -
Vium2562g00007 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Vium2562g00007 303 SMART rrm1_1 123 196 IPR000504 GO:0003723
Vium2562g00007 303 SMART rrm1_1 218 291 IPR000504 GO:0003723
Vium2562g00007 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Vium2562g00007 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Vium2562g00007 303 PANTHER OS02G0815200 PROTEIN 25 300 - -
Vium2562g00007 303 Gene3D - 208 302 IPR012677 -
Vium2562g00007 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Vium2562g00007 303 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 302 - -
Vium2562g00007 303 SUPERFAMILY RNA-binding domain, RBD 118 211 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2562g00007 Vium-Chr2562 57099 59448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2562g00007 122 300 Eukaryotic Initiation Factors Gene Family AT3G16380 31.285 8.43e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2562g00007 - - gmx:100810381 436.802