Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2561g00006 ATGAATTCTAGGTGCTTCCTTCATCAACAACAAGACTTTAGCATGGTTCCATTTTCTTCAAATTCTGTCACAGAAGATAGAATTGCTGGTGCTCGAAATAGGCCTCCACGTGTCACCCCTCCTTCCTTCTTGGTTCGGGTGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCTAATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGGTTGTTCAAATAACTATTACAACATTCACCTTGGCCATTTCCAAGAGGGAGAGACCTATTTGGCCTATGAGGATTTGGATTTCTGGTTATGATATTGGTGTTGTTCTTAACCTTCTGCTACTTTACGGGCGCTATCGTCAAACTTATCTCACGCAAGGCCTTTCTGATATAGAACAGCAGAGAAACCATGAAGAAACCAGTGTGTACAGGATGTCACACTTGATGAACAGATGTCGGACTTCGCTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCAACAAGCTCCAAAACTGCATGTGCTCTGCATCACTCTTCTTGCTTGGAATGCAGTGTGCTACTCTTTCCCTTTTCTACTGTTTCTGCTGCTGTGCTGTTTTGTGCCTCTCATCAGCACCCTCCTTGGCTACAACATGAATATAGCCTCTTTTGATAAAGGAGCTTCTGATGATCAAATTTCACAGCTTCCAAGCTGGAGACACAAAGAAGGTCGTGCAAAGTTAGAGCTTGGAAATGACTCTGATGGGAGTGAAAAACTGATTGATGAAGACCAAGAATGTTGTATCTGCTTAACCAAGTATAAAGACAAAGAGGAAGTTAGACAATTGCCCTGTTCCCATGTGTTCCATCTAAAATGTGTGGATCAATGGCTAAAAATTACATCATGTTGTCCTCTTTGCAAGCAAGGATTGGAGATGTAG 1014 0.4162 MNSRCFLHQQQDFSMVPFSSNSVTEDRIAGARNRPPRVTPPSFLVRVAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALVVQITITTFTLAISKRERPIWPMRIWISGYDIGVVLNLLLLYGRYRQTYLTQGLSDIEQQRNHEETSVYRMSHLMNRCRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCITLLAWNAVCYSFPFLLFLLLCCFVPLISTLLGYNMNIASFDKGASDDQISQLPSWRHKEGRAKLELGNDSDGSEKLIDEDQECCICLTKYKDKEEVRQLPCSHVFHLKCVDQWLKITSCCPLCKQGLEM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2561g00006 337 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 12 334 - -
Vium2561g00006 337 SMART ring_2 291 331 IPR001841 -
Vium2561g00006 337 Pfam Ring finger domain 290 332 IPR001841 -
Vium2561g00006 337 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Vium2561g00006 337 SUPERFAMILY RING/U-box 282 335 - -
Vium2561g00006 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 336 IPR013083 -
Vium2561g00006 337 CDD RING-H2_EL5-like 290 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2561g00006 Vium-Chr2561 22440 25409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2561g00006 35 335 C3H Transcription Factor Family AT4G26580 68.301 1.43e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2561g00006 - - gmx:100813670 606.29