Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2561g00001 ATGGAGAATGAAAGAGAAGATGAGATTGAGGACATGTCAACGTCACCCCCGTCTCTGGGCTCCCTGCAATTTGCAGGGAGCAATGGCTTTGGTCACAGCATGGAGTTCATGTCTCAGGCATACCTTCCCAATATGTACACTGATATTGACATAAAAATTGAGGATTCCAATTTCAACCAAGATCCCCCCCTCCCCATTTATCTCAAGTTTGAGGATGTAGAGTATAAGGTGAGAGCTAGCCAAGCGGCTTCCACTAATCCTGTGAAGTCAGTGATGTCAAAAGTTGCCATACAACACAACCTGGGAGAAGATAAATACAAGAAAATTTTGAAGGGTATGACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTTTGATGGGTCCTTCTGGGAGTGGAAAGACAACCTTGTTGAGAGTTGTAGGGGGAAGATTAGTTGAAAACGTAAAGGGAAAGATAACTTACAATGACGTTCGATTTAATGCAGCTGTCAAGAGAAGGATTGGCTTTGTTACACAAGAGGATGTGCTTTTCCCACAACTTACAGTAGAGGAAACATTGATCTTCTCTGCATTCTTAAGGTTACCGGGCAATATGAGCGAGCAACAAAAATATGCAAGAGTGGAGACCACTATCAAGGAGCTAGGCCTTGAAAGATGTCGCCACACAAAAATAGGTGGAGGATATCTCAAAAGCATATCTGGAGGAGAAAGGAAGCGAACCAGCATAGGCTATGAAATCCTTGTTGATCCTTCACTGCTTCTACTTGATGAACCAACTTCAGGCCTTGATTCCACAGCAGCAAATAGACTCCTTCTCACTCTTCAGGGACTTGCCAAGGGTGGAAGGACCATAATCACAACAATTCACCAGCCATCCAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTTATATCAGAAGGATACCCCATTTACTATGGGAAGGCCAAGGACACAATGCAGTACTTTTCATCGTTGAGTTTCACCCCGGAAATACCAATGAATCCTGCAGAATTCATGCTTGACTTGGCAACTGGACAAGTGAATAACATAAGCTTTCCTCAAGATACTTTCAAAGATCAAGAATCTGCCGACCGCTCAAAATCTGTTATTAAATATCTACAACTGAAGTATAAGGAAACACTGGAACCAAAAGAAAAAGATGAGAATCATGGAGCAGCAAACACACCAGAACATCTTCAGCTTGCCATTCAGGTTAAAAAGGACTGGACAGTGAGTTGGTTGGACCAATTCTTCATTCTTTACAAGAGAACATTCAGAGCAAGATGCAAGGACTATTTTGATAAATTAAGATTAGTTCAAGCACTTGGCATTGCTCTTTTGTTGGGGCTACTTTGGTGGAAATCCTCAACCACTACAGAGGCTCAAGTTAGAGATCAGGTTGGATTAATGTTCTATATCTGTATATTCTGGACATCTTCATGCATTTTTGGAGCAGTCTATGTCTTTCCATTTGAAAAGGTCTATTTGGTGAAAGAAAGGAAAGCAGATATGTATAGACTGAGTGTATACTACGTAAGCAGCACTCTGTGTGATATGGTGGCGCATGTTTTTTACCCTACTTTCTTCATGCTTATCTTGTACTTCATGGCTGGGTTTAAGAGGACTGTTGCTTGCTTCTTCCTGACTTTGTTCGCGGTGCTGCTAATAGCTATAACAAGTCAAGTAAGCCATATTGAGGGTTTTGTTTACATATATGGAACAACTTTGTGTAAATATTATGAAAATGGACAAATAAAAAAGAAATATTACTCATGA 1779 0.4092 MENEREDEIEDMSTSPPSLGSLQFAGSNGFGHSMEFMSQAYLPNMYTDIDIKIEDSNFNQDPPLPIYLKFEDVEYKVRASQAASTNPVKSVMSKVAIQHNLGEDKYKKILKGMTGSIGPGEILALMGPSGSGKTTLLRVVGGRLVENVKGKITYNDVRFNAAVKRRIGFVTQEDVLFPQLTVEETLIFSAFLRLPGNMSEQQKYARVETTIKELGLERCRHTKIGGGYLKSISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTAANRLLLTLQGLAKGGRTIITTIHQPSSRIFHMFDKLLLISEGYPIYYGKAKDTMQYFSSLSFTPEIPMNPAEFMLDLATGQVNNISFPQDTFKDQESADRSKSVIKYLQLKYKETLEPKEKDENHGAANTPEHLQLAIQVKKDWTVSWLDQFFILYKRTFRARCKDYFDKLRLVQALGIALLLGLLWWKSSTTTEAQVRDQVGLMFYICIFWTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYVSSTLCDMVAHVFYPTFFMLILYFMAGFKRTVACFFLTLFAVLLIAITSQVSHIEGFVYIYGTTLCKYYENGQIKKKYYS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2561g00001 592 FunFam ABC transporter G family member 22 97 326 - -
Vium2561g00001 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 325 IPR027417 -
Vium2561g00001 592 SMART AAA_5 119 310 IPR003593 GO:0016887
Vium2561g00001 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 332 IPR003439 GO:0005524
Vium2561g00001 592 Pfam ABC transporter 110 260 IPR003439 GO:0005524
Vium2561g00001 592 Pfam ABC-2 type transporter 289 352 IPR043926 GO:0140359
Vium2561g00001 592 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 55 562 - -
Vium2561g00001 592 Gene3D - 93 327 IPR027417 -
Vium2561g00001 592 Pfam ABC-2 type transporter 417 561 IPR013525 GO:0016020|GO:0140359
Vium2561g00001 592 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2561g00001 Vium-Chr2561 2116 5313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2561g00001 108 293 Calmodulin-binding Proteins AT2G36910 29.319 7.55e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2561g00001 K05681 - gmx:100815259 994.571