Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2556g00004 ATGGGTGTGGCGGAGGCCAACACAGCCCTTCAAGCGCCCTCCAAAGCGACGTCAGAGAGCGTCGAAGCCTTGCTTGATGCTGCAAGATATAATGACATGGATGATGTTAAGAGCTTAGAGGCAAGTGGGGTTCCTCTTGATTCCATGGATGATCAGGGGAGAACAGCTCTTCATATGGCTGCGGCTAATGGACATGTGGATATTGTGGAGTATCTAATCATTAGAGGAGTGGATCTTAATGCACCTAATGAGGAAAAAAATACACCTCTTCATTGGGCGTGTCTCAATGGGCATGTTGAGGTTGTCAAGAAACTAATATTAGCTGGAGCTAATGTCGGTGTTTTAAACAGGCACGAGAGGACCCCAATGGATGAAGCTGTGAGTGGGGGAAAGCTAGAAGTGATGGATGCAACCAATGAAGCTGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTCTGCACAAGAAACCTGA 474 0.4726 MGVAEANTALQAPSKATSESVEALLDAARYNDMDDVKSLEASGVPLDSMDDQGRTALHMAAANGHVDIVEYLIIRGVDLNAPNEEKNTPLHWACLNGHVEVVKKLILAGANVGVLNRHERTPMDEAVSGGKLEVMDATNEAVALVELRGAMVSAQET 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2556g00004 157 ProSiteProfiles Ankyrin repeat region circular profile. 52 84 - -
Vium2556g00004 157 SUPERFAMILY Ankyrin repeat 17 136 IPR036770 -
Vium2556g00004 157 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 11 135 - -
Vium2556g00004 157 PRINTS Ankyrin repeat signature 101 115 IPR002110 GO:0005515
Vium2556g00004 157 PRINTS Ankyrin repeat signature 53 68 IPR002110 GO:0005515
Vium2556g00004 157 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Vium2556g00004 157 Pfam Ankyrin repeats (many copies) 23 73 IPR002110 GO:0005515
Vium2556g00004 157 Gene3D - 3 155 IPR036770 -
Vium2556g00004 157 SMART ANK_2a 52 81 IPR002110 GO:0005515
Vium2556g00004 157 SMART ANK_2a 85 114 IPR002110 GO:0005515
Vium2556g00004 157 SMART ANK_2a 118 147 IPR002110 GO:0005515
Vium2556g00004 157 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Vium2556g00004 157 ProSiteProfiles Ankyrin repeat profile. 52 84 IPR002110 GO:0005515
Vium2556g00004 157 Pfam Ankyrin repeats (many copies) 76 126 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2556g00004 Vium-Chr2556 19534 23364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2556g00004 28 152 MAP Kinase Kinase Kinase AT2G31800 28.125 2.85e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2556g00004 - - gmx:100306615 269.626