Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2556g00002 ATGCAGGCCATGGATTCATTTGAGCCAGATGGAAACGGGAAGGAGGGGTCGCTTCCACCACCACCTCCTGTTGTTCCCTCTAATGTGGTACCTCTAAAAGCCGAAGAAGTACTCTCCCATGCTGAACCTGTAAAGAAAAAGGTGTCTCGACTTCCAATTGCCAGACGGGGTCTGGGATCAAGAGGAAATAAAATACAATTACTAGCTAATCACTTCAAAGTTAATGTCACTAAAAGCGATGGACATTTCTTCCATTATAGCGTGGCTTTTACTTATGAAGATGGGCGTCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATTATGGACAGGGTGCAGGAAACGTACCATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTTTGTTTACTCTTGGCTCCCTTCCTCGGAATAAGCTTGAATTTGAAGTTATTCTGGAGGATGTCACCTCTAACAGGAACAATGGCAATTGCAGTCCTGATGGTAATGGGGACAATGAGAGTGACAGAAAGAGAATGCGGCGTCCTTACCGTTCAAAATCATTCAAAGTAGAGATAAGCTACGCAGCAAAAATTCCGATGCAGGCCATCACCAATGCCTTACGTGGTCAAGAGACAGAGAATTTTCAAGAAGCCATTAGAGTTCTTGATATAATTTTGAGGCAGCATGCTGCTAAACAAGGCTGCTTGCTTGTACGCCAATCCTTTTTCCACAATGATCCAAACAATTTTGCTGATGTTGGAGGTGGTGTTCTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAGCTACACAGAGTGGCCTGTCTCTCAACATAGATGTTTCAACTACCATGATAATTACTCCCGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTTAGAGATCCTTTTCAACTTGACTGGGCTAAGGCCAAAAGAACCTTAAAGAATCTGAGGATTAAAACCAAGCCATCCAATCAAGAATTCAAAATTAATGGGCTCAGTGAACTCCCATGCAGAGAGCAGACTTTTACTTTGAAGGGTAAAGGTGGAGGGGATGGTGGAGATGGTAATGAGGAAATCACTGTTTATGATTATTTTGTGAATGTTCGAAAGATAGATTTGCGATACTCTTCTGATCTTCCATGCATTAATGTTGGGAAGCCTAAACGGCCAACTTATTTTCCCATTGAGCTTTGTGAATTGGTATCACTGCAACGGTATACAAAAGCTTTGTCAACCCTTCAAAGGGCCTCATTAGTGGAGAAATCCCGGCAGAAGCCACAAGATAGGATGAAAATTTTGTCTGATGCACTTAGATGCAGCAACTATGGGTCTGAACCTTTGCTCCGTAATTGTGGAATTTCTATAAGCACTGGTTTCACTGAAGTGGAGGGTCGGGTTTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGACCTCAATCCAAGGAATGGGAGATGGAATGTTAGCAACAAGAGGTTTGTGGAGCCGTCAAAGATAGAAAGATGGGCTGTTGCTAACTTTTCAGCACGCTGTGATGTACGAGGACTTGTGCGAGACCTGATTAGAATTGGAGATATGAAAGGAATTTCAATAGAGGAGCCGTTTGATGTGTTTGATGAGAGTCCTCAGTTTAGGCGTGCCCCACCCATGGTTAGAGTGGAGAAGATGTTTGAAACCATCCAGTCTAAACTTCCTGGCGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCATTAATCAGTGTATGTGTCCTTCAAGGGTCAATGATCAATACCTTACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCATTGTTAGGTGTTGAAGTTTCTCCTTCTCTTCCCATTGTTTCCAAAGCTCCTACCCTCATTCTGGGCATGGATGTGTCACATGGCTCTCCTGGGCAGACTGATATTCCTTCTATTGCTGCGGTGGTCAGCTCTAGACAGTGGCCTCTGATATCTAAATACAGGGCTTGTGTTCGTACCCAATCTGCAAAGGTTGAAATGATAGATAATTTGTTCAAGCAAGTGTCTGAAAAGGATGATGAAGGCATCATGAGGGAACTTCTGCTTGATTTCTATTCAACTTCTGGAAGGAGAAAACCAGAAAATATTATCATATTCAGGGATGGAGTTAGTGAGTCACAGTTCAATCAAGTTTTGAATATTGAACTTGATAGTATAATTGAGGCTTGCAAATTTCTTGATGAAAATTGGGAGCCAAAGTTTACAGTAATTGTTGCTCAGAAGAATCACCACACCAGATTTTTCCAGCCTGGCTCTCCTGACAATGTCCCTCCTGGAACCGTTATCGACAATAAAATTTGTCACCCCAGAAATTATGATTTCTACCTTTGTGCACATGCTGGAATGATAGGAACTAGCAGGCCTACCCATTACCATGTGCTGCTAGATGAAATTGGTTTCTCTCCGGATCAGCTACAAGAGCTTGTCCATTCATTATCATACGTGTATCAGAGGAGCACCACTGCCATTTCTGTTGTTGCCCCAATTTGCTATGCACACTTGGCGGCAACCCAGCTGGGGCATTTCATGAAATTTGAGGAAAAGTCTGAGACAACTACAAGCCATGGTGGAGGGAGTGGTGCTGGTGCTGTTCCGGTCCCTCAGATGCCTCCTTTGCAGGAAAATGTGCGCAACACAATGTTCTTTTGTTGA 2757 0.4295 MQAMDSFEPDGNGKEGSLPPPPPVVPSNVVPLKAEEVLSHAEPVKKKVSRLPIARRGLGSRGNKIQLLANHFKVNVTKSDGHFFHYSVAFTYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTLGSLPRNKLEFEVILEDVTSNRNNGNCSPDGNGDNESDRKRMRRPYRSKSFKVEISYAAKIPMQAITNALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRATQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTKPSNQEFKINGLSELPCREQTFTLKGKGGGDGGDGNEEITVYDYFVNVRKIDLRYSSDLPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQDRMKILSDALRCSNYGSEPLLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSNKRFVEPSKIERWAVANFSARCDVRGLVRDLIRIGDMKGISIEEPFDVFDESPQFRRAPPMVRVEKMFETIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPSRVNDQYLTNVMLKINAKLGGLNSLLGVEVSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKQVSEKDDEGIMRELLLDFYSTSGRRKPENIIIFRDGVSESQFNQVLNIELDSIIEACKFLDENWEPKFTVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGHFMKFEEKSETTTSHGGGSGAGAVPVPQMPPLQENVRNTMFFC 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2556g00002 918 ProSiteProfiles Piwi domain profile. 571 879 IPR003165 GO:0003676
Vium2556g00002 918 Gene3D - 466 632 - -
Vium2556g00002 918 CDD PAZ_argonaute_like 285 401 - -
Vium2556g00002 918 MobiDBLite consensus disorder prediction 1 27 - -
Vium2556g00002 918 SMART Piwi_a_2 571 879 IPR003165 GO:0003676
Vium2556g00002 918 FunFam Protein argonaute 3 639 918 - -
Vium2556g00002 918 Pfam Mid domain of argonaute 481 534 IPR032473 -
Vium2556g00002 918 Pfam N-terminal domain of argonaute 64 223 IPR032474 -
Vium2556g00002 918 ProSiteProfiles PAZ domain profile. 310 402 IPR003100 GO:0005515
Vium2556g00002 918 SMART DUF1785_2 233 285 IPR014811 -
Vium2556g00002 918 MobiDBLite consensus disorder prediction 156 179 - -
Vium2556g00002 918 SUPERFAMILY Ribonuclease H-like 555 877 IPR012337 -
Vium2556g00002 918 Gene3D paz domain 279 406 - -
Vium2556g00002 918 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 46 881 - -
Vium2556g00002 918 Pfam Piwi domain 572 879 IPR003165 GO:0003676
Vium2556g00002 918 Pfam Argonaute linker 1 domain 235 283 IPR014811 -
Vium2556g00002 918 Pfam PAZ domain 289 418 IPR003100 GO:0005515
Vium2556g00002 918 Gene3D - 638 918 IPR036397 GO:0003676
Vium2556g00002 918 MobiDBLite consensus disorder prediction 883 906 - -
Vium2556g00002 918 SUPERFAMILY PAZ domain 280 442 IPR036085 GO:0005515
Vium2556g00002 918 CDD Piwi_ago-like 446 873 IPR045246 -
Vium2556g00002 918 FunFam Protein argonaute 7 280 406 - -
Vium2556g00002 918 Pfam Argonaute linker 2 domain 428 474 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2556g00002 Vium-Chr2556 1078 8132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2556g00002 55 918 Eukaryotic Initiation Factors Gene Family AT5G43810 36.071 3.66e-170 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2556g00002 K11593 - gmx:100820376 1692.55