Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2556g00001 ATGGATTCATTTGAGCCAGATGGAAACGGGAAGGAGGGGTCGCTTCCACCACCACCTCCTGTTGTTCCCTCTAATGTGGTACCTCTAAAAGCCGAAGAAGTACTCTCCCATGCTGAACCTGTAAAGAAAAAGGTGTCTCGACTTCCAATTGCCAGACGGGGTCTGGGATCAAGAGGAAATAAAATACAATTACTAGCTAATCACTTCAAAGTTAATGTCACTAAAAGCGATGGACATTTCTTCCATTATAGCGTGGCTTTTACTTATGAAGATGGGCGTCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATTATGGACAGGGTGCAGGAAACGTACCATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTTTGTTTACTCTTGGCTCCCTTCCTCGGAATAAGCTTGAATTTGAAGTTATTCTGGAGGATGTCACCTCTAACAGGAACAATGGCAATTGCAGTCCTGATGGTAATGGGGACAATGAGAGTGACAGAAAGAGAATGCGGCGTCCTTACCGTTCAAAATCATTCAAAGTAGAGATAAGCTACGCAGCAAAAATTCCGATGCAGGCCATCACCAATGCCTTACGTGGTCAAGAGACAGAGAATTTTCAAGAAGCCATTAGAGTTCTTGATATAATTTTGAGGCAGCATGCTGCTAAACAAGGCTGCTTGCTTGTACGCCAATCCTTTTTCCACAATGATCCAAACAATTTTGCTGATGTTGGAGGTGGTGTTCTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAGCTACACAGAGTGGCCTGTCTCTCAACATAGATGTTTCAACTACCATGATAATTACTCCCGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTTAGAGATCCTTTTCAACTTGACTGGGCTAAGGCCAAAAGAACCTTAAAGAATCTGAGGATTAAAACCAAGCCATCCAATCAAGAATTCAAAATTAATGGGCTCAGTGAACTCCCATGCAGAGAGCAGACTTTTACTTTGAAGGGTAAAGGTGGAGGGGATGGTGGAGATGGTAATGAGGAAATCACTGTTTATGATTATTTTGTGAATGTTCGAAAGATAGATTTGCGATACTCTTCTGATCTTCCATGCATTAATGTTGGGAAGCCTAAACGGCCAACTTATTTTCCCATTGAGCTTTGTGAATTGGTATCACTGCAACGGTATACAAAAGCTTTGTCAACCCTTCAAAGGGCCTCATTAGTGGAGAAATCCCGGCAGAAGCCACAAGATAGGATGAAAATTTTGTCTGATGCACTTAGATGCAGCAACTATGGGTCTGAACCTTTGCTCCGTAATTGTGGAATTTCTATAAGCACTGGTTTCACTGAAGTGGAGGGTCGGGTTTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGACCTCAATCCAAGGAATGGGAGATGGAATGTTAGCAACAAGAGGTTTGTGGAGCCGTCAAAGATAGAAAGATGGGCTGTTGCTAACTTTTCAGCACGCTGTGATGTACGAGGACTTGTGCGAGACCTGATTAGAATTGGAGATATGAAAGGAATTTCAATAGAGGAGCCGTTTGATGTGTTTGATGAGAGTCCTCAGTTTAGGCGTGCCCCACCCATGGTTAGAGTGGAGAAGATGTTTGAAACCATCCAGTCTAAACTTCCTGGCGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCATTAATCAGTGTATGTGTCCTTCAAGGGTCAATGATCAATACCTTACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCATTGTTAGGTGTTGAAGTTTCTCCTTCTCTTCCCATTGTTTCCAAAGCTCCTACCCTCATTCTGGGCATGGATGTGTCACATGGCTCTCCTGGGCAGACTGATATTCCTTCTATTGCTGCGGTGGTCAGCTCTAGACAGTGGCCTCTGATATCTAAATACAGGGCTTGTGTTCGTACCCAATCTGCAAAGGTTGAAATGATAGATAATTTGTTCAAGCAAGTGTCTGAAAAGGATGATGAAGGCATCATGAGGGAACTTCTGCTTGATTTCTATTCAACTTCTGGAAGGAGAAAACCAGAAAATATTATCATATTCAGGGATGGAGTTAGTGAGTCACAGTTCAATCAAGTTTTGAATATTGAACTTGATAGTATAATTGAGGCTTGCAAATTTCTTGATGAAAATTGGGAGCCAAAGTTTACAGTAATTGTTGCTCAGAAGAATCACCACACCAGATTTTTCCAGCCTGGCTCTCCTGACAATGTCCCTCCTGGAACCGTTATCGACAATAAAATTTGTCACCCCAGAAATTATGATTTCTACCTTTGTGCACATGCTGGAATGATAGGAACTAGCAGGCCTACCCATTACCATGTGCTGCTAGATGAAATTGGTTTCTCTCCGGATCAGCTACAAGAGCTTGTCCATTCATTATCATACGTGTATCAGAGGAGCACCACTGCCATTTCTGTTGTTGCCCCAATTTGCTATGCACACTTGGCGGCAACCCAGCTGGGGCATTTCATGAAATTTGAGGAAAAGTCTGAGACAACTACAAGCCATGGTGGAGGGAGTGGTGCTGGTGCTGTTCCGGTCCCTCAGATGCCTCCTTTGCAGGAAAATGTGCGCAACACAATGTTCTTTTGTTGA 2748 0.4287 MDSFEPDGNGKEGSLPPPPPVVPSNVVPLKAEEVLSHAEPVKKKVSRLPIARRGLGSRGNKIQLLANHFKVNVTKSDGHFFHYSVAFTYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTLGSLPRNKLEFEVILEDVTSNRNNGNCSPDGNGDNESDRKRMRRPYRSKSFKVEISYAAKIPMQAITNALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRATQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTKPSNQEFKINGLSELPCREQTFTLKGKGGGDGGDGNEEITVYDYFVNVRKIDLRYSSDLPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQDRMKILSDALRCSNYGSEPLLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSNKRFVEPSKIERWAVANFSARCDVRGLVRDLIRIGDMKGISIEEPFDVFDESPQFRRAPPMVRVEKMFETIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPSRVNDQYLTNVMLKINAKLGGLNSLLGVEVSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKQVSEKDDEGIMRELLLDFYSTSGRRKPENIIIFRDGVSESQFNQVLNIELDSIIEACKFLDENWEPKFTVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGHFMKFEEKSETTTSHGGGSGAGAVPVPQMPPLQENVRNTMFFC 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2556g00001 915 FunFam Protein argonaute 7 277 403 - -
Vium2556g00001 915 Pfam Argonaute linker 1 domain 232 280 IPR014811 -
Vium2556g00001 915 SUPERFAMILY PAZ domain 277 439 IPR036085 GO:0005515
Vium2556g00001 915 SMART DUF1785_2 230 282 IPR014811 -
Vium2556g00001 915 MobiDBLite consensus disorder prediction 153 176 - -
Vium2556g00001 915 MobiDBLite consensus disorder prediction 1 22 - -
Vium2556g00001 915 Gene3D - 463 629 - -
Vium2556g00001 915 SUPERFAMILY Ribonuclease H-like 552 874 IPR012337 -
Vium2556g00001 915 CDD PAZ_argonaute_like 282 398 - -
Vium2556g00001 915 Pfam Argonaute linker 2 domain 425 471 IPR032472 -
Vium2556g00001 915 MobiDBLite consensus disorder prediction 880 903 - -
Vium2556g00001 915 ProSiteProfiles Piwi domain profile. 568 876 IPR003165 GO:0003676
Vium2556g00001 915 SMART Piwi_a_2 568 876 IPR003165 GO:0003676
Vium2556g00001 915 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 878 - -
Vium2556g00001 915 FunFam Protein argonaute 3 636 915 - -
Vium2556g00001 915 Pfam Mid domain of argonaute 478 531 IPR032473 -
Vium2556g00001 915 Gene3D paz domain 276 403 - -
Vium2556g00001 915 Pfam PAZ domain 286 415 IPR003100 GO:0005515
Vium2556g00001 915 Pfam N-terminal domain of argonaute 61 220 IPR032474 -
Vium2556g00001 915 ProSiteProfiles PAZ domain profile. 307 399 IPR003100 GO:0005515
Vium2556g00001 915 Pfam Piwi domain 569 876 IPR003165 GO:0003676
Vium2556g00001 915 CDD Piwi_ago-like 443 870 IPR045246 -
Vium2556g00001 915 Gene3D - 635 915 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2556g00001 Vium-Chr2556 1078 9651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2556g00001 52 915 Eukaryotic Initiation Factors Gene Family AT5G43810 36.071 4.82e-170 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2556g00001 K11593 - gmx:100820376 1692.55