Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2554g00006 ATGACTCAGGCAGTGGAGGTTCTGAATAGGTATGGGACGGATATGGTGGGGGAGCCCAGAGGTTCTGATTCGGAGTGTTTGGCGGGTTTCGAGTGTTTTCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTGGTGGTAGCTCCCCTCCTCTTCTTTCTGATTCCAATACGGATGGGAAGAGGAGGAGGTTGAGGGGTTCCTCGTCCTTTGATTTCAGAGTGCCTGGGAGGATGTTCTCGAATGGGTCAAGCGAGGTTGCATCCATGTTTTGTAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTATTTGGGAGAACTTTTGCTCCAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCACGGACCTTACGGCCACAAAGTTGCGAAGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAGAGATGGAGTCAGTGATCATAGCAGTGCCAACGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTGGTGGATGAGAAAACTTACCCCACTTATCATGAACTTGATGAAACAGATATTACTTTGACATTGAAAGAGTCTTATCTGAAAGCTTGTAAGCTCATGGACAAAGAACTGAAAATGCATCCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAACAAGGGCTGGACCTTGTTATTGGAAATATTGGGGACTCGAGAGCTATATTGGGTACCAGAGATCACGATGACTCTCTTATTGCTGTTCAGTTGACCGTTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGAATTAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCACAATGAACCGGAGGTGGCTCGAGTTTGGTTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGTGCATTTGGAGACTTTTGCCTGAAAGACTTTGGATTGATTTCTGTTCCAGATATCTCATATCACCACCTTACCGAGAAGGATGAGTTTGTTGTGCTAGCGACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTCGTGGACATTGTAGCATCTGCTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCATGGAGGACAAAATATCCTTTTTGCAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTTGATCCAGATACAGATTTCAAGTCAAATGATACCAAAGGCAAGTTGGTATCCGAGGCATCTGTTGACCAATCTGAGGATTTATCTTGA 1308 0.4495 MTQAVEVLNRYGTDMVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLSDSNTDGKRRRLRGSSSFDFRVPGRMFSNGSSEVASMFCKQGRKGINQDAMLIWENFCSKEDTIFCGVFDGHGPYGHKVAKKVRDSFPLKLNAQWDLHHKNRDGVSDHSSANGSYKSEGNGFRLVDEKTYPTYHELDETDITLTLKESYLKACKLMDKELKMHPDIDCFCSGTTAVTLVKQGLDLVIGNIGDSRAILGTRDHDDSLIAVQLTVDLKPNLPREEERIRLRRGRVFSLHNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLISVPDISYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARALVESAVQAWRTKYPFCKVDDCAAVCLFFDPDTDFKSNDTKGKLVSEASVDQSEDLS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2554g00006 435 SMART PP2C_4 83 405 IPR001932 -
Vium2554g00006 435 PANTHER PROTEIN PHOSPHATASE 80 405 IPR015655 GO:0004722|GO:0006470
Vium2554g00006 435 FunFam probable protein phosphatase 2C 33 88 410 - -
Vium2554g00006 435 ProSiteProfiles PPM-type phosphatase domain profile. 93 407 IPR001932 -
Vium2554g00006 435 SUPERFAMILY PP2C-like 85 408 IPR036457 -
Vium2554g00006 435 Pfam Protein phosphatase 2C 107 385 IPR001932 -
Vium2554g00006 435 MobiDBLite consensus disorder prediction 414 435 - -
Vium2554g00006 435 Gene3D - 87 408 IPR036457 -
Vium2554g00006 435 CDD PP2Cc 93 407 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2554g00006 Vium-Chr2554 28185 33240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2554g00006 61 408 PP2C-type Phosphatase Gene Family AT1G16220 59.889 6.14e-152 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2554g00006 - - vum:124830906 884.789