Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2554g00005 ATGCCATCACCACCTGCCGGTGACGCACCCGCTCGTGACGGTAGCGCGCCCTCTTCGTTTTTGCACAAACAGCACCAACACCAACGCCGGTTTCCTTTCATCTTTTTTCCAGGTTTCTGTTGCATTCCTCGATTCGGATATCGGTTTTCGCGAGTGATTTTCACGGAATCAAAGGAGAAAGCGAGAGAGCGCTGGATCGAGAGTCTCGATTCACTTTTTCTGATTTCACGGTTTCATTTTACTGTATTTGAATTACGCGTTTTCAGTTCTGATTCACGCGCTTTTCGTCAAGGAAACTACTGCATAGGTGGATACGCTATTGATTTCGCTTTGATTCGAATCAAATCGGATTTCATTGCAATCATGACTCAGGCAGTGGAGGTTCTGAATAGGTATGGGACGGATATGGTGGGGGAGCCCAGAGGTTCTGATTCGGAGTGTTTGGCGGGTTTCGAGTGTTTTCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTGGTGGTAGCTCCCCTCCTCTTCTTTCTGATTCCAATACGGATGGGAAGAGGAGGAGGTTGAGGGGTTCCTCGTCCTTTGATTTCAGAGTGCCTGGGAGGATGTTCTCGAATGGGTCAAGCGAGGTTGCATCCATGTTTTGTAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTATTTGGGAGAACTTTTGCTCCAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCACGGACCTTACGGCCACAAAGTTGCGAAGAAAGTTAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAGAGATGGAGTCAGTGATCATAGCAGTGCCAACGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTGGTGGATGAGAAAACTTACCCCACTTATCATGAACTTGATGAAACAGATATTACTTTGACATTGAAAGAGTCTTATCTGAAAGCTTGTAAGCTCATGGACAAAGAACTGAAAATGCATCCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAACAAGGGCTGGACCTTGTTATTGGAAATATTGGGGACTCGAGAGCTATATTGGGTACCAGAGATCACGATGACTCTCTTATTGCTGTTCAGTTGACCGTTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGAATTAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCACAATGAACCGGAGGTGGCTCGAGTTTGGTTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGTGCATTTGGAGACTTTTGCCTGAAAGACTTTGGATTGATTTCTGTTCCAGATATCTCATATCACCACCTTACCGAGAAGGATGAGTTTGTTGTGCTAGCGACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTCGTGGACATTGTAGCATCTGCTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCATGGAGGACAAAATATCCTTTTTGCAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTTGATCCAGATACAGATTTCAAGTCAAATGATACCAAAGGCAAGTTGGTATCCGAGGCATCTGTTGACCAATCTGAGGATTTATCTTGA 1671 0.4518 MPSPPAGDAPARDGSAPSSFLHKQHQHQRRFPFIFFPGFCCIPRFGYRFSRVIFTESKEKARERWIESLDSLFLISRFHFTVFELRVFSSDSRAFRQGNYCIGGYAIDFALIRIKSDFIAIMTQAVEVLNRYGTDMVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLSDSNTDGKRRRLRGSSSFDFRVPGRMFSNGSSEVASMFCKQGRKGINQDAMLIWENFCSKEDTIFCGVFDGHGPYGHKVAKKVRDSFPLKLNAQWDLHHKNRDGVSDHSSANGSYKSEGNGFRLVDEKTYPTYHELDETDITLTLKESYLKACKLMDKELKMHPDIDCFCSGTTAVTLVKQGLDLVIGNIGDSRAILGTRDHDDSLIAVQLTVDLKPNLPREEERIRLRRGRVFSLHNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLISVPDISYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARALVESAVQAWRTKYPFCKVDDCAAVCLFFDPDTDFKSNDTKGKLVSEASVDQSEDLS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2554g00005 556 Pfam Protein phosphatase 2C 229 506 IPR001932 -
Vium2554g00005 556 ProSiteProfiles PPM-type phosphatase domain profile. 214 528 IPR001932 -
Vium2554g00005 556 PANTHER PROTEIN PHOSPHATASE 197 526 IPR015655 GO:0004722|GO:0006470
Vium2554g00005 556 FunFam probable protein phosphatase 2C 33 209 531 - -
Vium2554g00005 556 Gene3D - 208 529 IPR036457 -
Vium2554g00005 556 SMART PP2C_4 204 526 IPR001932 -
Vium2554g00005 556 MobiDBLite consensus disorder prediction 535 556 - -
Vium2554g00005 556 CDD PP2Cc 214 528 IPR001932 -
Vium2554g00005 556 SUPERFAMILY PP2C-like 206 529 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2554g00005 Vium-Chr2554 28145 33240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2554g00005 182 529 PP2C-type Phosphatase Gene Family AT1G16220 59.889 4.77e-150 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2554g00005 - - vum:124830906 1115.52