Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2553g00011 ATGGCGGTTCAGGATGAGCATGACCCTATGCTCATGGTGCTTCCTTCTCTCTCTCCACCCAACACCTACCAAGCCGTCGTTATCGGTGGCACCTTTGACCGATTGCATGACGGCCACCGTCTCTTCCTCACTGCCGCGGCCGAGGTGGCAAAGGGTCGGATTGTAATTGGAGTTTGCGACGGTCCTATGCTGGCAAAGAAACAGTTTGCTGAACTGATACAGCCAGTTGAAGAAAGGATAAATAATGTCAAAAATTTCATTAAGTCTATCAAGCCAGATTTAGAAGTGCAAGCTGTACCAATCACAGATCCCTTCGGCCCTTCCATTGTAGATGAAAATTTAGAGGTTGTGATTGTGAGCAAAGAAACATTACCGGGAGGATTGGCAATAAACAGAAAAAGAGCTGAAAGAGGCCTTTCACTGTTGAAGATTGAAGTTGTGGATTTGCTTTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCGACGATGCTACGGAAGATTGAGGCTGAAAAGGCGAAACAACAAAACACGATATCGCAGACGATTAATGCAGTGTTTGTTTCACTTTGGTGTGGGATTTTGCAAAACTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACAGAAGGACCGTGAAGGCGATCTTGACATTGAGGCAGGGAAACTCTACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTTCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTCAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTGCTTCGAGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGAAAAGCTTGAGGTTCTTGACAAATCCAACATGGTCAACCATAGTTTGTCAGATTCCTACAAAGAGGGGAGCTCAATTTACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGCCATGATGAATGATTTTCAGTCATTGAGAGACCAAATTTTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATACAGCAACGGGTGAGGTTCCCACTGAAGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCAGAATTGGACACTCAGGTTAGGCATGAGGCTGTAATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAGCGTGGATAACATTGAGGATAATGTGGCCAATGCGGGTAACTTCATCCATGGTGGAACCAATAGTCTCTACTATGCCAACCAAATGAAGAAGAAGAACAGAAAGTGGGTCTGTTGGGTTTTCGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 1494 0.4478 MAVQDEHDPMLMVLPSLSPPNTYQAVVIGGTFDRLHDGHRLFLTAAAEVAKGRIVIGVCDGPMLAKKQFAELIQPVEERINNVKNFIKSIKPDLEVQAVPITDPFGPSIVDENLEVVIVSKETLPGGLAINRKRAERGLSLLKIEVVDLLSGESGEIKLSSTMLRKIEAEKAKQQNTISQTINAVFVSLWCGILQNFAKMNDLMTKSFLSYVELKKQAQKDREGDLDIEAGKLYPTEDRNLSQFFQEVEAIKVEMEEITNLLFDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKEKLEVLDKSNMVNHSLSDSYKEGSSIYRTRMSVTNGLRVKLRAMMNDFQSLRDQILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDAELDTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGESVDNIEDNVANAGNFIHGGTNSLYYANQMKKKNRKWVCWVFAVGLIILLVCIVAMLSS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2553g00011 497 FunFam Syntaxin 132 398 496 - -
Vium2553g00011 497 FunFam Bifunctional coenzyme A synthase 25 169 - -
Vium2553g00011 497 CDD SynN 241 391 IPR006011 GO:0016020
Vium2553g00011 497 Coils Coil 251 271 - -
Vium2553g00011 497 CDD SNARE_syntaxin1-like 405 462 - -
Vium2553g00011 497 Gene3D - 399 496 - -
Vium2553g00011 497 SUPERFAMILY t-snare proteins 239 458 IPR010989 GO:0016020|GO:0016192
Vium2553g00011 497 Pfam Syntaxin 243 438 IPR006011 GO:0016020
Vium2553g00011 497 Gene3D - 236 367 - -
Vium2553g00011 497 PANTHER SYNTAXIN 238 486 IPR045242 -
Vium2553g00011 497 Pfam Cytidylyltransferase-like 28 102 IPR004821 GO:0003824|GO:0009058
Vium2553g00011 497 NCBIfam cytidyltransferase-like domain 26 90 IPR004821 GO:0003824|GO:0009058
Vium2553g00011 497 Coils Coil 164 184 - -
Vium2553g00011 497 Pfam SNARE domain 441 489 IPR000727 -
Vium2553g00011 497 Gene3D HUPs 25 175 IPR014729 -
Vium2553g00011 497 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 403 465 IPR000727 -
Vium2553g00011 497 SMART tSNARE_6 398 465 IPR000727 -
Vium2553g00011 497 CDD PPAT_CoAS 26 166 - -
Vium2553g00011 497 SMART SynN_4 236 363 IPR006011 GO:0016020
Vium2553g00011 497 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 238 369 - -
Vium2553g00011 497 SUPERFAMILY Nucleotidylyl transferase 25 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2553g00011 Vium-Chr2553 65583 71551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2553g00011 200 497 SNARE and Associated Proteins AT2G18260 59.935 9.45e-128 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2553g00011 K08486 - cit:102608467 666.766