Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2553g00010 ATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACAGAAGGACCGTGAAGGCGATCTTGACATTGAGGCAGGGAAACTCTACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTTCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTCAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTGCTTCGAGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGAAAAGCTTGAGGTTCTTGACAAATCCAACATGGTCAACCATAGTTTGTCAGATTCCTACAAAGAGGGGAGCTCAATTTACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGCCATGATGAATGATTTTCAGTCATTGAGAGACCAAATTTTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATACAGCAACGGGTGAGGTTCCCACTGAAGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCAGAATTGGACACTCAGGTTAGGCATGAGGCTGTAATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAGCGTGGATAACATTGAGGATAATGTGGCCAATGCGGGTAACTTCATCCATGGTGGAACCAATAGTCTCTACTATGCCAACCAAATGAAGAAGAAGAACAGAAAGTGGGTCTGTTGGGTTTTCGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 897 0.4459 MNDLMTKSFLSYVELKKQAQKDREGDLDIEAGKLYPTEDRNLSQFFQEVEAIKVEMEEITNLLFDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKEKLEVLDKSNMVNHSLSDSYKEGSSIYRTRMSVTNGLRVKLRAMMNDFQSLRDQILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDAELDTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGESVDNIEDNVANAGNFIHGGTNSLYYANQMKKKNRKWVCWVFAVGLIILLVCIVAMLSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2553g00010 298 PANTHER SYNTAXIN 40 287 IPR045242 -
Vium2553g00010 298 FunFam Syntaxin 132 199 297 - -
Vium2553g00010 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Vium2553g00010 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Vium2553g00010 298 CDD SNARE_syntaxin1-like 206 263 - -
Vium2553g00010 298 SMART tSNARE_6 199 266 IPR000727 -
Vium2553g00010 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Vium2553g00010 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Vium2553g00010 298 Coils Coil 52 72 - -
Vium2553g00010 298 CDD SynN 42 192 IPR006011 GO:0016020
Vium2553g00010 298 Pfam SNARE domain 242 290 IPR000727 -
Vium2553g00010 298 Gene3D - 200 297 - -
Vium2553g00010 298 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Vium2553g00010 298 Gene3D - 37 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2553g00010 Vium-Chr2553 65512 66700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2553g00010 1 298 SNARE and Associated Proteins AT2G18260 59.935 1.02e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2553g00010 K08486 - gmx:112997615 523.087