Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2553g00003 ATGTCGTTGAAAAGCATAGTAAGAGAACTGAAGGAGATGAGAGACGGGATTGGCAACATGTCAAAGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGAACAAAGTCACATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCGATTCAGCAAGGGCAGTGGGCGCATTTACCCCCTGAGTTGCTGCTGGACATAATAAGTAGGGTGGAAGAGAGCGAGACTACCTGGCCTGCACGTGCCGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCTTGGAGGGATGTTACCAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAGCAGCCCGGGCCACGGGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTATACATTGGCCTGGTGCCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGGACAGACTTTATTGTGTCTTTGGTTGCAGATGACTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCACACGGAGCTGCAATTCAACAAGATAGTGGGTCTAGTAGGAGATTCCATTCTAAGCAGGCATCTCCTAGAGTTTCAGCATTTAACTATGTTGTTGGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCATTGTACCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACGTCTTTCCCTCAAATCATTGACAAGCCTTTTTCTCCCTCACCAGCTCTAAAAGGAAAAGGTCCAAGTACAGATTTAAATAATGTAAACCTCCCTAAGCTAGCAGTACCTAGTCAAGGGTCAGCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCCGCTGTTGATCCATCTCATAATGTTTTAGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTCTGAGCAGCTTTGACACCAAACCAGCTTGTGAATGA 1245 0.449 MSLKSIVRELKEMRDGIGNMSKRGVESRRWNGRTKSHVAPDITLTSLEPIQQGQWAHLPPELLLDIISRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQQDSGSSRRFHSKQASPRVSAFNYVVGTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGTAPTPTSFPQIIDKPFSPSPALKGKGPSTDLNNVNLPKLAVPSQGSAEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVLAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2553g00003 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Vium2553g00003 414 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Vium2553g00003 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Vium2553g00003 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Vium2553g00003 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Vium2553g00003 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Vium2553g00003 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Vium2553g00003 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vium2553g00003 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vium2553g00003 414 CDD F-box_AtTLP-like 55 99 - -
Vium2553g00003 414 PANTHER TUBBY-RELATED 49 412 - -
Vium2553g00003 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Vium2553g00003 414 Gene3D - 48 104 - -
Vium2553g00003 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
Vium2553g00003 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Vium2553g00003 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Vium2553g00003 414 Pfam Tub family 116 409 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2553g00003 Vium-Chr2553 38653 41537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2553g00003 1 414 TUB Transcription Factor Family AT2G18280 64.819 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium2553g00003 Tub 2.2e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2553g00003 K19600 - gmx:100778290 762.681