Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2553g00001 ATGAGAATGGACATTGGTGAAGGGGAGGCCTTGCTAAATCCCCGCTCCTTTAAGGTGCATGGTAAAATGTGCACAGAACTTGCAAAATTAGTTGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGGTTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAACACAATTGAAAAAGCCAAAGTACTCGTGCAGCATTGCTCTGAATGCAGCAAACTCTACCTGGTTATGACAGGGGATACAGTACTCTCAAAATGCCTAAAGACAACACGATTATTAGAGAAAAGCTTAATCCAAATTCAGAACATGGTTCCTGTTATGTTGGCAGTGAAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCCAATGAAGAAGAGGCTGGGAGGGTTGTGAAAGAGTTGCTCACTTCAACTTCAGATTCAGTCGACGATTCTGAAGTTAAAGCTCTTCAGTCTGTGGCATCGCGACTGAAAATAACATCAGCGAGGGCCATCGTAACAGAGCAACGATCTATTAGGAAGTTGTTGGATAAACTTGGACCAAATGAGCTGACAAAGAAAAAGATACTGAGTTATCTTCTGCTTCTACTGAAAAAGCATGCAAAGCTCCTGGTGGAAGAACATGAGGAGAGGGTCTATTCTTCCGAAGAACATGTTGCAACGGAGAACTCTTATCACGATTCTCTACGAAACCATCATGTGGAGTCAGACCAAAGCTTAAACTATGATCAGTATATAACTCACACCGGTGAGTTAGGTGGAGTTGACCTCCCTGAGCAATATAAATGCCCAATATCCTCAAGGTTGATGAATGATCCTGTTATCATTGAATCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAAGGATATATGCCCCAAAACCAGAAAGAAACTAATCCATACGGCTTTAACTCCAAATGTGGCCATGAAGGACTTAATATCAAAGTGGTGCAGAAAAAATGGAGTCTCCATTCCAGATCCTAGTAGGCAAGCAGAAGATATTTCCTCATGGGATGTTTCAAGCACTTCCATTAATAGTATAGGAAGTTATTTCAATGATTTCAACCCGCCAGTGGATCTTAGTAACATGTCAATTGGGTCACTTGATGTTAGTTTTAGTTCAGATGCCTCGCATGGTAGGACCACTCGTGGCTCTATGCTGATCAGGACTAGTGACAATTCTGAAAGACATCAAGTTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTAAACTCGGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGACCTGAAAGATCACTTGAAAAGCAATAGCCAAGCTTTTGGTTCTGTATCTGCAGACAGTTTGGTTGAACCACTCCTCAGATTTCTGAACAATGCATATGATCTGCGTGATGTTCAAGCGTTGAGAGCTGGAACTCAACTTCTGTTGGATTTTGTGAACAACTGCAGAAATGGTAATACTAATTTGAATGAAGAGACGTTCATTATGTTGGCAAGTTTTCTTGATTCAGAAGCGACAGAAGAAATTCTTGCCATACTGGAAGAACTGTCAGGACGTTGGTATAATGCACCTAAAATTGCAGCATCCAGTACTCTCAATTCTATTTTAAACATACTTGATTTCGAAAAAAAAGGTTTCCAACAACAAGCTATTAGAATAATGTACAATTTGTCTTTCATTGGCGAAGTCTGTCCCCGCATGCTATCACTCAAGTGCATCCCAAAATTGCTGCCATTTTTCGAAGACAGAAACCTTTTGAGGTACTGCATACGTATACTGAAAAATCTTTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGGTGCGTAAGTTCGGTTACTGAAATACTTAATACCGGCAATAATGAAGAACAAGAACATGCACTGGCAGTTCTAGTCTCTCTATGCTCTCATGTGGATTACTTGAAGTTAGTAATGAGTGAGCATGACAATATCATACCTTCTCTTTTCTTGATCTCCCAGAATGGAAACGATAAAGGAAAGAAAAGTGCGTTGGAATTGATCCATCTTTTGGATGATGTCAACATTGGTGACAATAAAGATTGCCCTGAGCCAAATATCAGCAACTCTTGTCGAGATTCTAACACTCACCCAGCTGAAGAAAATAGACCACCGAAGAAATCCACCTTTCTGAAGAAACTATCACCATTCTCAAAGTCCAGTTCACATGGATCAAAATCCAAAAGATGA 2274 0.4041 MRMDIGEGEALLNPRSFKVHGKMCTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLNNTIEKAKVLVQHCSECSKLYLVMTGDTVLSKCLKTTRLLEKSLIQIQNMVPVMLAVKVSRIIHDLECTRFVLDPNEEEAGRVVKELLTSTSDSVDDSEVKALQSVASRLKITSARAIVTEQRSIRKLLDKLGPNELTKKKILSYLLLLLKKHAKLLVEEHEERVYSSEEHVATENSYHDSLRNHHVESDQSLNYDQYITHTGELGGVDLPEQYKCPISSRLMNDPVIIESGVTYERMWIKKWFDEGKDICPKTRKKLIHTALTPNVAMKDLISKWCRKNGVSIPDPSRQAEDISSWDVSSTSINSIGSYFNDFNPPVDLSNMSIGSLDVSFSSDASHGRTTRGSMLIRTSDNSERHQVHTEIHDTDLMLLPKLGDLQWDSQCKVIQDLKDHLKSNSQAFGSVSADSLVEPLLRFLNNAYDLRDVQALRAGTQLLLDFVNNCRNGNTNLNEETFIMLASFLDSEATEEILAILEELSGRWYNAPKIAASSTLNSILNILDFEKKGFQQQAIRIMYNLSFIGEVCPRMLSLKCIPKLLPFFEDRNLLRYCIRILKNLCDTEEGRNSVAETKGCVSSVTEILNTGNNEEQEHALAVLVSLCSHVDYLKLVMSEHDNIIPSLFLISQNGNDKGKKSALELIHLLDDVNIGDNKDCPEPNISNSCRDSNTHPAEENRPPKKSTFLKKLSPFSKSSSHGSKSKR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2553g00001 757 Gene3D - 428 707 IPR011989 -
Vium2553g00001 757 SUPERFAMILY ARM repeat 428 699 IPR016024 -
Vium2553g00001 757 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Vium2553g00001 757 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Vium2553g00001 757 PANTHER U BOX DOMAIN-CONTAINING 22 707 - -
Vium2553g00001 757 MobiDBLite consensus disorder prediction 713 757 - -
Vium2553g00001 757 SUPERFAMILY RING/U-box 262 345 - -
Vium2553g00001 757 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Vium2553g00001 757 Pfam Kinesin-associated protein (KAP) 481 657 - -
Vium2553g00001 757 CDD RING-Ubox_PUB 269 321 IPR045210 -
Vium2553g00001 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2553g00001 Vium-Chr2553 30889 36026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2553g00001 1 703 U-box Gene Family AT4G36550 38.182 2.79e-141 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2553g00001 - - gmx:100775550 1109.36