Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2549g00018 ATGGATTCTGGAAGGGATGCGGGTGGTGTGGCAGGAACAGTTCTAATTCCCATGCGTTTTGTTTGGCCATATGGAGGAAGGAGTGTGTTTCTCTGCGGTTCTTTCACACGGTGGTCTGAGCTTCTACCGATGTCGCCAGTGGAAGGATGTCCAACCGTGTTTCAAGTTATTTATAATTTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACATGATGAACATCAACCTTACGTACCAGGAGAATATGGGATGTTCAACACTGTCTTCTTGGCTACTGATCCCAACTACATACCTGTTTTGAATTCAGATGTTGCACCTGGAAATAGCATGGATGTGGATAATGAGGCTTTTCGCCGAGTGGTCCGGTTGACTGATGGTAGTGAGGTGCTGCCAAGAATATCCGAAGCTGATGTACAAATCTCCCGTCAGCGTATTTCTGCATTTCTTTCTTCCCACACTGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGACGTTGATCTACCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCATGGGTCGAATCTGACAGAGGAGGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCTTATCTGAATAGGCAGAACAATGGACATGGAGCTGTGTTTTCCAGACGTTTTATCCATTCAGGGCCATATGACAATCTGAAAGATATTGCCGTGAAAATCCTCCAAAAGGAGGTTTCAACTGTTCCTGTTATCCATTGTTCTTCTGAACATGCTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGCACTTCAATTTCCAATCTGTGCAATCCCTGTGGGCACGTGGGTACCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCTATAGTTGATGATAATGACTCGTTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGAACAGAGCGTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCAAGTTCTTTTTCATCATTTTGCATACCTATAAACTGCCAACAATCAATGTTTTTAACACATATATGTTCTGATTTCATCTTTTCCTCATTGACTTGGGATGTTTATTGA 1356 0.4248 MDSGRDAGGVAGTVLIPMRFVWPYGGRSVFLCGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGMFNTVFLATDPNYIPVLNSDVAPGNSMDVDNEAFRRVVRLTDGSEVLPRISEADVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHSISAWKEGKSYLNRQNNGHGAVFSRRFIHSGPYDNLKDIAVKILQKEVSTVPVIHCSSEHASFPQLLHLASLSGILKCICRYFRHCSSSLPALQFPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQASSFSSFCIPINCQQSMFLTHICSDFIFSSLTWDVY 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2549g00018 451 SUPERFAMILY CBS-domain pair 348 419 IPR046342 -
Vium2549g00018 451 SMART cbs_1 351 399 IPR000644 -
Vium2549g00018 451 SMART cbs_1 169 218 IPR000644 -
Vium2549g00018 451 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Vium2549g00018 451 Gene3D - 140 323 IPR046342 -
Vium2549g00018 451 ProSiteProfiles CBS domain profile. 163 225 IPR000644 -
Vium2549g00018 451 Gene3D - 324 439 IPR046342 -
Vium2549g00018 451 SUPERFAMILY CBS-domain pair 150 320 IPR046342 -
Vium2549g00018 451 SUPERFAMILY E set domains 16 97 IPR014756 -
Vium2549g00018 451 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 140 420 - -
Vium2549g00018 451 Pfam CBS domain 349 395 IPR000644 -
Vium2549g00018 451 Gene3D Immunoglobulins 16 109 IPR013783 -
Vium2549g00018 451 Pfam Glycogen recognition site of AMP-activated protein kinase 16 96 IPR032640 -
Vium2549g00018 451 ProSiteProfiles CBS domain profile. 347 404 IPR000644 -
Vium2549g00018 451 CDD E_set_AMPKbeta_like_N 17 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2549g00018 Vium-Chr2549 134648 142015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2549g00018 6 124 Protein tyrosine phosphatase (PTP) family AT3G01510 28.125 3.66e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2549g00018 - - gmx:100785692 795.808