Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2549g00011 | ATGGAAGCGTTCGGTGGGTTCGCGGTGGACGAGAAAGCCGTTACGGTTGAGAACGCTTTTTTGGATTTTCTCAAAAGTTTCAAATCTAGCCAACGGAACGAGATTCAATACGAAGCGGAGATTGAAGTGATGAGAGTCAACGAATCCAACACTATGTTCATCGATTTCTCCCACGTCGTCAAATTCAGTGACCTCCTCCAGCAGACTATCTCCGATGAGTATTTGAGATATGAGCCTTATTTGAGGAACGCTTGTAAGAGATTTGTTATGGAACTCAAGCCGTCAGTTGTATCCGACGATGGCCCTAACAAGGACATCAACGTTGCTTTCTACAACATTGCAGTTATTAAGCGGTTAAGGGAATTGGGCACCTCGGAAATTGGGAGACTTGTATCCGTTACAGGAGTGGTGACGAGGACAAGTGAGGTTCGACCTGAACTTCTCCAAGGAACTTTCAAGTGCTTGGAATGCGGCGGTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACCGAGCCAACAATCTGTACAAATGCCACCTGTAGCAATCGAACAAGGTGGGTATTGCTTCGCCAGGAGAGCAAGTTTGCTGATTGGCAGAGGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCGGGCTCTCTTCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATCGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGTACAGTAGTTGTCATACCTGACATAATGGCATTAGCATCTCCTGGAGAGAGATCAGAGTGTCGTCGTGATGCTTCTCAACGCAAGGGTCCCACCGCTGGAAATGAAGGTGTCGGTGGCCTCAAGGCCCTGGGAGTTAGAGACCTCTCCTATCGTCTAGCGTTTATTGCTAACTCTGTTCAGATTTGTGATGGAAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATGTCGATGAAGATTACCAACAGTTTACTACGCAGGAACTGGATGAAATTCAACGAATGAGGAATACTCCTGATTTTTTCAACAAACTAGTTGAAAGCGTTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTCATGAGTGGTGTTCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAATGTTTGCGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTTAAGTATACTTCAGGCATAGTGCCAAGATCTGTATATACATCTGGGAAATCCTCATCTGCTGCAGGCTTGACTGCAACTGTTGCGAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGCATCTGCTGCATTGATGAATTCGACAAGATGGACATCAAAGATCAGGTTGCCATTCACGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCTGGAATACAAGCAACACTTAATGCTCGTACGTCCATTCTTGCCGCTGCCAATCCTGCTGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCCCTTCCACCGGCTATACTTTCGAGGTTCGATCTCGTATATGTTATGATTGATGATCCAGATGATCAGACAGATTATCACATTGCCCATCATATTGTGAGAGTTCATCAAAAGCGAGAAGCTGCTCTTGCTCCAGCATTCTCTACAGCAGAACTGAAGCGTTATATAGCGTATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCCAGAAAACTACTGGTAGACTCTTATGTTGCGCTTCGTAGAGGTGATACAAATCCAGGGAGTAGAGTTGCTTATCGTATGACAGTTAGGCAGTTGGAAGCATTAATCAGGCTGTCAGAGGCCATCGCACGGTGTCATTTGGACAATCAGGTACAACCTCGCCATGTTCGTCTAGCAGTGAAACTGCTGAAAACTTCTATTATAAGTGTGGAGTCTAGTGAGATCGATCTGTCAGAGTTTCAAGAAGAAAATCAGAATGCCGGGGCAGCTGGTGGTGTTGGAAATGAAAAAAATGGAGATGCTAATGGCGCAGGAGGTGATGGAAATGATAATAGAGATTCTAATGATGCAGGAAATCAAGCAGATGGATCTAACTCCCAGGGAACGAGACAAGCTGACCGAAATGATGGAAATCCAGCGGATGGGTCTAAACCCCAAGCGAAAAAACTCGTTATAAGTGATGAATATTTCCAAAGAGTAACCAGCGCCCTTATCATGCGTCTTAGGCAGCATGAGGAGGCTGCTATGCAAGGAAATGGTTTGGCTGGAATGAGACAAAAAGATTTGATTCAATGGTACGTAGACCAACAAAACGAGAGAAATAACTACAGTTCGATGGAGGAAGTGTCAACTGAAATTTCAAAAATTAAAGCTATTATAGAGAGTTTAATTCGCAGAGAAGGTCATTTGATAGTGGTGGATGATGGGCAAGAGGCGGCTGCCGAAGGAGGAGGCGCACCTAGAAATAACCGAATTTTAGCGGTGGCTCCCAATTATGTCGTGGATTGA | 2547 | 0.4452 | MEAFGGFAVDEKAVTVENAFLDFLKSFKSSQRNEIQYEAEIEVMRVNESNTMFIDFSHVVKFSDLLQQTISDEYLRYEPYLRNACKRFVMELKPSVVSDDGPNKDINVAFYNIAVIKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICTNATCSNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDIMALASPGERSECRRDASQRKGPTAGNEGVGGLKALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDVDEDYQQFTTQELDEIQRMRNTPDFFNKLVESVAPTVFGHPDIKRAILLMLMSGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREAALAPAFSTAELKRYIAYAKTLKPKLTSDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENQNAGAAGGVGNEKNGDANGAGGDGNDNRDSNDAGNQADGSNSQGTRQADRNDGNPADGSKPQAKKLVISDEYFQRVTSALIMRLRQHEEAAMQGNGLAGMRQKDLIQWYVDQQNERNNYSSMEEVSTEISKIKAIIESLIRREGHLIVVDDGQEAAAEGGGAPRNNRILAVAPNYVVD | 848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2549g00011 | 848 | Pfam | MCM6 C-terminal winged-helix domain | 734 | 847 | IPR041024 | - | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Vium2549g00011 | 848 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Vium2549g00011 | 848 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Vium2549g00011 | 848 | Pfam | MCM P-loop domain | 331 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | ProSiteProfiles | MCM family domain profile. | 343 | 549 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | CDD | MCM6 | 346 | 652 | - | - | |
| Vium2549g00011 | 848 | ProSitePatterns | MCM family signature. | 452 | 460 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vium2549g00011 | 848 | Gene3D | - | 323 | 672 | IPR027417 | - | |
| Vium2549g00011 | 848 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Vium2549g00011 | 848 | MobiDBLite | consensus disorder prediction | 258 | 278 | - | - | |
| Vium2549g00011 | 848 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Vium2549g00011 | 848 | MobiDBLite | consensus disorder prediction | 669 | 735 | - | - | |
| Vium2549g00011 | 848 | Gene3D | - | 8 | 115 | - | - | |
| Vium2549g00011 | 848 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 654 | IPR027417 | - | |
| Vium2549g00011 | 848 | FunFam | DNA helicase | 732 | 848 | - | - | |
| Vium2549g00011 | 848 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 458 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 399 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 472 | 485 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 523 | 531 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 508 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | Pfam | MCM AAA-lid domain | 568 | 653 | IPR041562 | - | |
| Vium2549g00011 | 848 | Coils | Coil | 792 | 812 | - | - | |
| Vium2549g00011 | 848 | Gene3D | - | 732 | 848 | - | - | |
| Vium2549g00011 | 848 | MobiDBLite | consensus disorder prediction | 694 | 722 | - | - | |
| Vium2549g00011 | 848 | SMART | mcm | 115 | 654 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 799 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium2549g00011 | 848 | Gene3D | - | 146 | 197 | - | - | |
| Vium2549g00011 | 848 | FunFam | DNA helicase | 328 | 658 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2549g00011 | Vium-Chr2549 | 90760 | 96489 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2549g00011 | 1 | 848 | Core DNA Replication Machinery Family | AT5G44635 | 71.202 | 0.0 | 1271 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2549g00011 | K02542 | - | gmx:100787290 | 1449.11 |