Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2543g00001 ATGTTACCTTGGCTTATAGCTTTTGCTACTGGCAGTGTAGCAGCTATCCTTATTTACCGTCTTTTCAAGCTCAAAACCGCGCATTCACCACTGCCACCAGGGCCAAGCCCATGGCCCGTAGTGGGAAACTTGCCTCACATGGGCCATGCGCCACACCAAACCATTGCGGCCCTGGCCCATAAGTATGGCCCGCTCATGCACCTTCGGTTTGGGTTTGTCGACGTTGTGGTGGCGGCTTCCGCCTCCGTGGCGGAGCAGTTCTTGAAGGTTCACGATGCGAACTTTTCAAACCGGCCACGGAGATTCATGAACAAGTACATGAGTTATTACAAGGAAGATTTTGGGTTTGCTTCCTATGGCCCTCGGTGGCGGTTGTTGAGGAAAATAAGCTCAACTCACATGTTCTCTGGCAGGGCCATGGACGATTTTAGGGAAGTGCGTCAGGAAGAGGTAGAAAGACTGACATGTGATTTGGCAAGTTCAGGCTCAAAAGCAGTGAAATTGGGACTGTTGTTGAACGTGTATGCCACCAACACATTGGCAAGGGTGATGATAGGACGAAGAGTTTTCAACGATGGAAACAGTGAGTGGGATCCAAAGGCAGATGAGTTTAAATCCATGGTGTTGGAGCTCATGAACTTGTTAGGAGTTTTCAATATTGGTGACTTCATTCCATTCTTGGATTGGCTAGACCTTCAAGGAGTAAAAGCCAAAGCAAAAAAACTACGCAAGGGCTTTGACGCATTTTTGACTAGCATTCTGGAGGAACATCAGGTTTCCATGAATGAGAAACACCAAAACACATACTTAGCAACGTTGTTGTCACTCAAAGAAACTCCTCAAGATGGATATAATCTCTGTGAAGAGGAGATCAAAGCAATTCTTTTGAACATGTTTGGAGCTGGAACAGACACCTCATCAAGCACAATTGAATGGGCAATGGCTGAAATAATTAGGAACCCAAGAATTATGGTCGAGGTGCAACAAGAAATAGACAGTGTTGTGGGTGAAAACAGACTTGTGACAGAACTTGACTTGCCCCAACTCCCTTACTTACAGGCTGTGGTGAAGGAAACATTGCGATTACACCCACCAACCCCTCTTTCTATTCCACGATTTGCTGAAAAGAGCTGTGAGATATTAGGTTACCACATTCCCAAAGGTGCAACTCTCATGGTGAATGTTTGGGCCATAGGACGTGACCCTAAGGAGTGGTCAGACCCATTGGAGTTCAAGCCCGAAAGGTTTCTCCTTGGTGGTGAGAAGGCTGGTGTGGATGTTAGGGGCAACAACTTTGAGGTTATACCCTTTGGCGCTGGTCGTAGAATCTGTGCTGGTATGAGCTTAGCTCTGATGGAGGTTCAGCTGGTGACTGCTACCCTAGCCCATGCATTTGATTGGGAGTTAGAGAATGAGCTTGACCCAAAAAGTCTCAATATGGATGAAGCATATGGGCTCACCCTCCAAAGAGAAGTGCCTCTTTGTGTCCACCCTCGTCCTAGGCTCTCACGCCACTTGTATTCATCATCATCTCCATGA 1539 0.4704 MLPWLIAFATGSVAAILIYRLFKLKTAHSPLPPGPSPWPVVGNLPHMGHAPHQTIAALAHKYGPLMHLRFGFVDVVVAASASVAEQFLKVHDANFSNRPRRFMNKYMSYYKEDFGFASYGPRWRLLRKISSTHMFSGRAMDDFREVRQEEVERLTCDLASSGSKAVKLGLLLNVYATNTLARVMIGRRVFNDGNSEWDPKADEFKSMVLELMNLLGVFNIGDFIPFLDWLDLQGVKAKAKKLRKGFDAFLTSILEEHQVSMNEKHQNTYLATLLSLKETPQDGYNLCEEEIKAILLNMFGAGTDTSSSTIEWAMAEIIRNPRIMVEVQQEIDSVVGENRLVTELDLPQLPYLQAVVKETLRLHPPTPLSIPRFAEKSCEILGYHIPKGATLMVNVWAIGRDPKEWSDPLEFKPERFLLGGEKAGVDVRGNNFEVIPFGAGRRICAGMSLALMEVQLVTATLAHAFDWELENELDPKSLNMDEAYGLTLQREVPLCVHPRPRLSRHLYSSSSP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2543g00001 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Vium2543g00001 512 Gene3D Cytochrome P450 24 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 Pfam Cytochrome P450 32 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS P450 superfamily signature 444 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 175 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2543g00001 512 FunFam Cytochrome P-450 19 20 499 - -
Vium2543g00001 512 PANTHER CYTOCHROME P450 98A9 12 508 - -
Vium2543g00001 512 SUPERFAMILY Cytochrome P450 32 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2543g00001 Vium-Chr2543 1720 3556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2543g00001 17 511 Cytochrome P450 AT5G07990 61.200 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2543g00001 K05280 - gmx:100807293 751.51