Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium253g00006 ATGCTGAAGCGCATCGGCCGCCAGGAGTCACTCTCCGACAAGATCTACCGGTTCCGAGGGACTCTGCTTGTTGTCGCGATCCCACTTCTTCTCATTGTGTTCGTCCTCTACGTCATGCCGTCCAGCTCCTCCAACGAGTCCGCCGGAGACTACGCTCTCGTCAACCGCAAAATGTCCCCCAACAAGAAATCCGGAAGTTCCTACGCCGTCATCTTTGACGCCGGCAGCTCCGGCAGCCGTGTCCACGTCTTCCATTTCGATCAAAACCTAGATCTCGTTCACATTGGCAAAGATCTCGAGCTTTTCGTTCAGCTTAAACCGGGTTTGAGTGCGTACGCTCAAGATCCGAAAAAGGCAGCAGAATCTTTGGTTCCGCTTCTGGATAAAGCTGAGAGTGTTGTTCCTCGTGAATTGCGATCCAAGACAATAGTTCGAGTTGGGGCGACTGCGGGTTTGAGGGCATTGGAAGGAGATGCATCAGATAGGATCTTGCAAGCGGTAAGGGATTTGCTTAAGGACAAGAGTAGCCTGAGATCTGAAGCTGATGGAGTTACAGTGCTGGATGGAACACAAGAAGGTGCTTATCAATGGGTTACGATCAACTATCTATTGGGAAATTTGGGAAAAGAGTATTCAAAGACTGTCGGAGTTGTTGATCTTGGTGGTGGATCTGTTCAAATGGCTTATGCCATCTCAGAGACAGAAGCTGCCACGGCTCCGAAAGTAGCAGATGGAGAGGATCCTTATGTCAGGGAGATGTTCCTGAGGGGAAGGAAATACTACGTCTATGTTCACAGTTACCTGCGCTATGGTTTACTAGCTGCTCGTGCAGAGATTTTAAAGGTTTCTGATGATGCTGAAAACCCTTGTATCTTATCTGGCTATGATGGGTCCTATCTGTATGGGGGAAAGTCGTTTAAGGCTTCATCTTCCTCATCAGGAGCAAACATAAATGAATGCAAAAGTGTTGCTCTTAAGGCTCTCAAAGTTAACGAGATAGCATGTACTCATATGAAGTGTACTTTTGGTGGGATATGGAATGGTGGAGGGGGGGATGGGCAGAAGAATCTTTTTGTTGCATCTTTTTTCTTTGACCGCGCTGCTGAGGCTGGTTTTGCTGATCCAAACTCGCCAGTTGCGATAGTTCGTCCAGCAGATTTTGAAGATGCAGCTAAGCGAGCATGTCAAACAAAACTTGAGAATGCCAAATCAACTTATCCAAATGTTGAGGAGGGGAACCTTCCTTATCTTTGCATGGATCTCGTATACCAGTATACACTGCTTGTTGATGGGTTTGGCATATATCCATGGCAAGAAGTTACATTGGTGAAGAAAGTTAAATACGATGATGCCCTCGTTGAGGCAGCATGGCCCCTTGGCAGCGCCATTGAAGCTGTATCATCTACGTAG 1410 0.4738 MLKRIGRQESLSDKIYRFRGTLLVVAIPLLLIVFVLYVMPSSSSNESAGDYALVNRKMSPNKKSGSSYAVIFDAGSSGSRVHVFHFDQNLDLVHIGKDLELFVQLKPGLSAYAQDPKKAAESLVPLLDKAESVVPRELRSKTIVRVGATAGLRALEGDASDRILQAVRDLLKDKSSLRSEADGVTVLDGTQEGAYQWVTINYLLGNLGKEYSKTVGVVDLGGGSVQMAYAISETEAATAPKVADGEDPYVREMFLRGRKYYVYVHSYLRYGLLAARAEILKVSDDAENPCILSGYDGSYLYGGKSFKASSSSSGANINECKSVALKALKVNEIACTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNSPVAIVRPADFEDAAKRACQTKLENAKSTYPNVEEGNLPYLCMDLVYQYTLLVDGFGIYPWQEVTLVKKVKYDDALVEAAWPLGSAIEAVSST 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium253g00006 469 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 187 202 IPR000407 GO:0016787
Vium253g00006 469 Pfam GDA1/CD39 (nucleoside phosphatase) family 64 468 IPR000407 GO:0016787
Vium253g00006 469 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 12 468 IPR000407 GO:0016787
Vium253g00006 469 FunFam Apyrase 1 188 447 - -
Vium253g00006 469 CDD NBD_sugar-kinase_HSP70_actin 70 229 - -
Vium253g00006 469 Gene3D Exopolyphosphatase. Domain 2 188 447 - -
Vium253g00006 469 Gene3D - 68 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium253g00006 Vium-Chr253 116089 124050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium253g00006 3 468 Calmodulin-binding Proteins AT3G04080 70.172 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium253g00006 K14641 - gmx:100786073 808.52