Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium253g00003 ATGGTTGGTGCCATAAAAGCTGCGATTGGAGACGGGGTGTTGACTTTCATGTGGGTGTTTTGTTCTTCTCTGTTGGGGATTGCTTCTGGGTACGTAACTAAAGCCCTTAACCTTCAAGACATCTCCTACAACGGGTTCCCTTACCCTTCTCTCATTGTCACCATTACCCTCGTTTTTGTACTTGTTTTCCTTTTCACCCTCATCGGCAATGCCCTCGGTGGCGCCAGCTTCAACCCCACCGGCACCGCTTCCTTTTACGCCGTTGGTCTCGGCTCTGATACGCTCTTCTCAATGGCGCTTCGTTTCCCTGCCCAGGCAGTTGGTGCTGCTGCTGGTGCAATGGCAATTATGGAAGTGATTCCTCAAAAGTATAGGCATATGATTGGAGGTCCTTCTCTGAAAGTGGATTTGCATACTGGGGCTGTTGTTGAAGGGGTGTTGACCTTTTTTATTACCTTTATCGTTCTCTTCATCTTCCTCAAGGGCCCTCGTAGTGATTTGTTGAAGATCTGGTTTCTAGCCACAGCAACTGTAGTTTTGGTCATGGTTGGATCTGCTTACACTGGCCCAGCCATGAATCCTGCCAATGCTTTTGGTTGGGCTTACTTAAACAATTGGCACAACACATGGGACCAATTGTATGTATACTGGATTTGCCCCTTTGCCGGAGCAATATTGGCAGCATGGTTGTTTCGTGCAATCTTTCCCCCACCACCACCGCCAGAACTCAAACAAAAGAAAGCATGA 747 0.4806 MVGAIKAAIGDGVLTFMWVFCSSLLGIASGYVTKALNLQDISYNGFPYPSLIVTITLVFVLVFLFTLIGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQAVGAAAGAMAIMEVIPQKYRHMIGGPSLKVDLHTGAVVEGVLTFFITFIVLFIFLKGPRSDLLKIWFLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQLYVYWICPFAGAILAAWLFRAIFPPPPPPELKQKKA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium253g00003 248 PANTHER AQUAPORIN SIP1-1 3 247 IPR044222 GO:0015250
Vium253g00003 248 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 Gene3D Glycerol uptake facilitator protein. 3 239 IPR023271 -
Vium253g00003 248 SUPERFAMILY Aquaporin-like 4 243 IPR023271 -
Vium253g00003 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium253g00003 248 FunFam Aquaporin SIP1-1 2 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium253g00003 Vium-Chr253 88210 91508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium253g00003 2 248 Major Intrinsic Protein MIP AT5G18290 53.226 6.75e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium253g00003 K09875 - gmx:100792787 423.705