Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2539g00003 ATGGCCAACCTCAAAATGCTCCTCGTACTCTTGTCTTTGTTGCTGTTCCTTCTGATCCCAGTTTCTTCTCAGCCTAACCAGATCTTCTATGCTGGATTCAAGGGTTTGGATAGCAGCAACATGACCCTTAATGGTGTAGCAGAAATTGAGCCAAGTGGGGTACTGAAACTCACAAATGATTCAAGTAAAGTAATGGGTCATGCTTTTTATCCAACTGCTCTTCGGTTCAAGAACTCAAGTGATGGTAAAGCTTTCTCCTTTTCTTCCTCTTTTGCTTTGGCTATTGTTCCTGAGTTTCCAAAGCTTGGAGGGCATGGCCTTGCTTTTACAATTGCAACTTCCAAGGATCTGAAGGCTCTTCCAAGCCAGTATCTTGGTCTTCTTAACTCAAGTAGCATAGGGAACTTCTCCAACCACCTTTTTGCTGTCGAGTTTGACACAGCCCAAGATTTTGAGTTTATGGACATCAATGATAACCATGTTGGAATTGACATCAATAGCTTGGTATCCAATGCTTCTGCTCCTGCTGGATTCTACACTGGGGATCATGATTCAGACAAACAGAATCTCACTCTCAAAAGTGGGCAACCTATTCTGGTTTGGGTTGATTATGATTCTGCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCTTCTACCAAACCCAGAAGATCACTCTTGTCTTTTCCTGTGGATCTTTCGCCAATCCTTAGGGATTCCATGTATGTAGGGTTCTCTGCATCCACAGGGTTGCTTGCTAGCTCCCATTACATTTTGGGTTGGAGCTTCAAAATCAATGGACCAGCAACACCCCTTGATCTCTCTTCCCTCCCACAGCTTCCAGGGCCAAAGAGGAAACACACGTCTCTGATAATTGGGGTTTCAGTGTCTGGAGCTGTTCTTGCATTATTTTCTGTCTTACTCGGCTTCTACATGTACAGAAGGTACAAGAATGCCGACGTTATAGAAGCTTGGGAGCTTGAGATTGGACCACACAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGATTTAGGAGTGTCTACAAGGGAAAATTGCCAAATTCCAACACCCAAGTTGCTGTCAAGAGAATCTCACATGACTCAAAACAAGGCCTGAGGGAATTTGTGTCAGAAATAGCCAGCATAGGCAGGCTTCGCCACCGGAATTTGGTTCAGCTTTTGGGGTGGTGTCGCCGGTGCGGTGACCTCCTCCTTGTGTATGTTTTCATGGCTAATGGTAGCTTAGACAAGTACTTGTTTGATGAACCAGAAATAATCCTGAGTTGGGAGCAAAGGTTTAAGGTGGTCAAGGATGTTGCTTCTGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACACAGAGATGTGAAGGCTAGCAATGTGCTGCTAGATGGAGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGTGCTAACCCAAGTACCACAAGGGTAGTGGGGACATTAGGGTATTTGGCACCTGAGGTGCCTAGGACAGGGAAGGCCACACCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTTGAGGTGGCATGTGGGCTGAGGCCACTTGACCCAAAGGCAATGCCAGAAGATTTGGTTTTGGTTGATTGTGTGTGGAACAGGTACAAGCAAGGGAGAATACTTGATGTGGTGGACCCTAGACTGAATGGTGCTTTTAATGAAAGAGAGGTACTGATGGTGTTGAAATTGGGGCTTCTATGTTCAAATGGTTCTCCCACTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTCTTGGAGGGAGAAGTTGGTGTGCCAGATGAATTGAGAAGGCAAGGAGAGACAGATTCTCAGGAGGGTTTTGATCAGTTCTTGCACTTACTTCACTCTTCTTCTTTTCATCAGATGAGCAGAAGCACTTATGGTGGTAGTTCTCCTTCTTTTACTGATACATCACTCTTTACTCCCACTGCTAAAGGAGAAACAATGTGA 2043 0.4493 MANLKMLLVLLSLLLFLLIPVSSQPNQIFYAGFKGLDSSNMTLNGVAEIEPSGVLKLTNDSSKVMGHAFYPTALRFKNSSDGKAFSFSSSFALAIVPEFPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSSIGNFSNHLFAVEFDTAQDFEFMDINDNHVGIDINSLVSNASAPAGFYTGDHDSDKQNLTLKSGQPILVWVDYDSAQSVVNVTISASSTKPRRSLLSFPVDLSPILRDSMYVGFSASTGLLASSHYILGWSFKINGPATPLDLSSLPQLPGPKRKHTSLIIGVSVSGAVLALFSVLLGFYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFRSVYKGKLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRCGDLLLVYVFMANGSLDKYLFDEPEIILSWEQRFKVVKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPSSDVFAFGALLLEVACGLRPLDPKAMPEDLVLVDCVWNRYKQGRILDVVDPRLNGAFNEREVLMVLKLGLLCSNGSPTARPSMRQVVRFLEGEVGVPDELRRQGETDSQEGFDQFLHLLHSSSFHQMSRSTYGGSSPSFTDTSLFTPTAKGETM 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2539g00003 680 FunFam L-type lectin-domain containing receptor kinase S.4 24 271 - -
Vium2539g00003 680 CDD lectin_legume_LecRK_Arcelin_ConA 30 267 IPR001220 GO:0030246
Vium2539g00003 680 PANTHER - 18 623 - -
Vium2539g00003 680 Pfam Legume lectin domain 29 277 IPR001220 GO:0030246
Vium2539g00003 680 SUPERFAMILY Protein kinase-like (PK-like) 328 628 IPR011009 -
Vium2539g00003 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 285 IPR013320 -
Vium2539g00003 680 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
Vium2539g00003 680 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2539g00003 680 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vium2539g00003 680 Gene3D - 29 271 - -
Vium2539g00003 680 FunFam Lectin-domain containing receptor kinase A4.3 331 422 - -
Vium2539g00003 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vium2539g00003 680 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Vium2539g00003 680 Pfam Protein kinase domain 346 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2539g00003 680 CDD STKc_IRAK 352 618 - -
Vium2539g00003 680 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2539g00003 680 MobiDBLite consensus disorder prediction 655 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2539g00003 Vium-Chr2539 30173 33261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2539g00003 21 624 Receptor kinase-like Gene Family AT3G55550 62.255 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2539g00003 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2539g00003 - - gmx:100801247 1147.5