Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2530g00003 ATGGGCGACGGCGAAAGCACCTCCGATCGGTCGCTTAATTTCGAGGACATGACAGTGGTCTCCGCCGTGGGGCGCGGCGCTAAAGGCGTGGTGTTCCTGGCTCGCGCCGGTGGCCGGCGGTCGGGAGAGTGCGTGGCACTGAAAGTGATGTCGAAGGCGCTGATTGCGCAGAAAAGAACGAGAAAGAAGGACGAGAGAGTGGGAGTGTCGTTTGAAGAGGAAGTGCTCCGTCGTTTCGATCATCCGCTCTTGCCGAGGCTTAGAGGCGTTCTTGAAACGGAGAAAGTGATTGCGTTCGCCATCGATTACTGCCATGGTGGCACGCTCCACTCTCTCAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGACACCATCAGGTTTTACGCTGTAGAATTGGTGCTTGCATTGGAATATTTAACGAAAGGGGAAAGTGGAAAGAATTTGAAGCCAGAAAATGTGATGATTCAAGAAAACGGCCACATAATGCTTGTCGATTTTGATCTCTCCAAAAAGCTAAACCCTAAATCCCCTCACTCACTGAGTCAAAACTCGACCCCGAGTCCTAACTCGGAGAAACGTTCAAGGAAACAACAACGATTAACTCGTATATACAGTTTTTGTAACTCCGGCATCTCGCCGTGGGACTCGGACTCGGAGCCCCAGCTAAGTACAGTCGACTCAGTGCGTCACACGGAGTCTGACTCGGTTGAGAAATCAAACTCGTTCGTTGGAACAGAAGAATACGTGGCACCCGAAATCTTATCAGGGAAAGGTCACGGTTTTAGCGTTGATTGGTGGTCATACGGCATCTTGTTGTACGAGATGCTGTACGGAACGACGCCGTTTAAAGGCTTAAATAGGAAGGAAACGTTTTACCGGATCTTAACTAAAGAGCCAGAGTTAACGGGAGAGAAGACGGCGTTACGGGATTTAATTTCAAGATTGTTGGAAAAAGATCCTGACCGTCGGATCCCAGTGGAGGAGATCAAAGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACAAAGTGTTGCACATTGCAAGACCACCTTATATTCCCACAAATGAGGTTGAGAACAAAGTGGGGTTTAGCAAAAACGACGTGGAAGTGTTTGTGAACGAAGTGTTTTTTCCCACGAATGATGATGATGGCGTAGAGAATCCTGAGCATAACAAGAAGAATGACGATTTTTTAATTTTTTGA 1206 0.4801 MGDGESTSDRSLNFEDMTVVSAVGRGAKGVVFLARAGGRRSGECVALKVMSKALIAQKRTRKKDERVGVSFEEEVLRRFDHPLLPRLRGVLETEKVIAFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLTKGESGKNLKPENVMIQENGHIMLVDFDLSKKLNPKSPHSLSQNSTPSPNSEKRSRKQQRLTRIYSFCNSGISPWDSDSEPQLSTVDSVRHTESDSVEKSNSFVGTEEYVAPEILSGKGHGFSVDWWSYGILLYEMLYGTTPFKGLNRKETFYRILTKEPELTGEKTALRDLISRLLEKDPDRRIPVEEIKGHDFFKGVKWDKVLHIARPPYIPTNEVENKVGFSKNDVEVFVNEVFFPTNDDDGVENPEHNKKNDDFLIF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2530g00003 401 MobiDBLite consensus disorder prediction 175 192 - -
Vium2530g00003 401 FunFam Serine/threonine-protein kinase OXI1 108 175 - -
Vium2530g00003 401 Gene3D Transferase(Phosphotransferase) domain 1 108 177 - -
Vium2530g00003 401 Gene3D Transferase(Phosphotransferase) domain 1 234 355 - -
Vium2530g00003 401 ProSiteProfiles AGC-kinase C-terminal domain profile. 337 401 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium2530g00003 401 ProSiteProfiles Protein kinase domain profile. 17 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2530g00003 401 MobiDBLite consensus disorder prediction 216 230 - -
Vium2530g00003 401 SUPERFAMILY Protein kinase-like (PK-like) 18 359 IPR011009 -
Vium2530g00003 401 PANTHER FLIPPASE KINASE 1-RELATED 10 361 - -
Vium2530g00003 401 Gene3D Phosphorylase Kinase; domain 1 16 107 - -
Vium2530g00003 401 MobiDBLite consensus disorder prediction 175 198 - -
Vium2530g00003 401 FunFam Serine/threonine-protein kinase OXI1 238 355 - -
Vium2530g00003 401 Pfam Protein kinase domain 238 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2530g00003 401 Pfam Protein kinase domain 19 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2530g00003 401 MobiDBLite consensus disorder prediction 216 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2530g00003 Vium-Chr2530 16712 19730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2530g00003 1 377 AGC Kinase Gene Family AT3G25250 57.031 6.45e-142 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium2530g00003 Pkinase 3.8e-23 CL0016