Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2530g00001 ATGGGACCAAACGCTGCGGCGGCGAAACAAGCTGAGCAACTCCGAATTAACGGCAACACTTACTTCAAGAAAGACCGTTTTGGGGCCGCCATCGATGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGCTGGACAGCAATTCAGTCAAGGCCCACTATATGTTGGGGCTAGCATTACTACGGAGACAAGAATCTGCCAAGGGAATTAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAGCGATCATCTTCGAAACGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTGGAATTCTCCGAAGCGGAAGGATTTGTAGATGATCCTACTACTTCCCATTCGGAACAATTAGAGGCTTTAGAAGTAGTCTTCAATATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTACTTATGTTGCAGAATCACACTCGACATTTTTCATGATCCTGTAATCACTCCAAGTGGGCTTACATATGAGAGAGCAGTGATTCTTGAACACCTTCAGAAGGTGGGTAAATTCGACCCAATCACACGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTCTTGGACAAACATGGTTGGGCTTACAAGGTAGATTAA 837 0.4648 MGPNAAAAKQAEQLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYMLGLALLRRQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERSSSKRSWELQSLKEACESALKEKHFLEFSEAEGFVDDPTTSHSEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2530g00001 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vium2530g00001 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 6 276 IPR045200 GO:0000209|GO:0061630
Vium2530g00001 278 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Vium2530g00001 278 SUPERFAMILY TPR-like 9 129 IPR011990 GO:0005515
Vium2530g00001 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Vium2530g00001 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Vium2530g00001 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Vium2530g00001 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Vium2530g00001 278 Pfam U-box domain 201 273 IPR003613 GO:0004842|GO:0016567
Vium2530g00001 278 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Vium2530g00001 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 277 IPR013083 -
Vium2530g00001 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Vium2530g00001 278 SUPERFAMILY RING/U-box 194 275 - -
Vium2530g00001 278 CDD RING-Ubox_CHIP 201 271 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2530g00001 Vium-Chr2530 7 11265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2530g00001 4 277 U-box Gene Family AT3G07370 68.613 5.25e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2530g00001 K09561 - gmx:100796519 522.316