Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2527g00003 ATGTTAACCACCGTCAACAACGACAACTCCTTCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGCCGAATTCTCCACACCGTCTTCCGAGAGCCGCCGCCTCCTCATCGCATGCGCCGCCGACAATTCCGACGAATTCATTCGCCACCTCGTTCTCAACCTCCATTCCTGTTCCATTGAGGACCAGAAACAGGCCACCATGGAAATCAGGCTACTCGCCAAGAACAAGGAAGAGAACCGCGTCAGGATCGCAAAAGCCGGCGCGATTAAACCCTTGGTTTCGCTTCTATCGTCCTCGTCGGACCTTCAGCTTCAGGAGTACGTGGTGACCGCGATTCTCAATCTCTCGCTCTGCGACGAGAACAAAGACCTGATCAATTCCTCGGGAGCGACGAAGCCTCTTGTGGGAGCGCTGGAGACGGGGACGCCTACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTCCGGCTCTCGCGGAGAGAGGAGGACAAGATTGCGATAGGGAGGGCGGGGGCGATTCCTCCTCTGGTGAAGCTTCTAGAAGGTGGGGGTTTGCGCGGGAAGAAGGACGCGGCGACGGCGCTGTACGCGGTGTGTTCGGTGAAGGAGAACAAGGTGAGGGCGGTGAGGGCGGGGGTTATGAGGGCGCTGGTGGAGCTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGTGTACGTGGTGAGCGTGGTTGTTGGGGTGGTGGAGGGGAGGGCGGCGTTGGTAGATGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATCGCCGTCGGGGTTCTGTTGCAGATTTGCGAGGAGAGTTGGGTGTACCGTACTATGGTGGCCCGCGAAGGAGCCATTCCACCCCTCGTCGCTTTCTCACAATCACAGTCACACTCACACTCCAATCGCCCCAGACACAAGGCTGAGAAACTCATAGAGCTTCTACGGCAACCGAGATCCGGCAATGGCGCTGGTCGTTCCTAG 1017 0.5939 MLTTVNNDNSFSAFSDCNSDRSAEFSTPSSESRRLLIACAADNSDEFIRHLVLNLHSCSIEDQKQATMEIRLLAKNKEENRVRIAKAGAIKPLVSLLSSSSDLQLQEYVVTAILNLSLCDENKDLINSSGATKPLVGALETGTPTAKENAACALLRLSRREEDKIAIGRAGAIPPLVKLLEGGGLRGKKDAATALYAVCSVKENKVRAVRAGVMRALVELMADLGSSMVDKAVYVVSVVVGVVEGRAALVDEGGIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSQSHSHSNRPRHKAEKLIELLRQPRSGNGAGRS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2527g00003 338 SMART arm_5 201 241 IPR000225 GO:0005515
Vium2527g00003 338 SMART arm_5 119 159 IPR000225 GO:0005515
Vium2527g00003 338 SMART arm_5 77 118 IPR000225 GO:0005515
Vium2527g00003 338 SMART arm_5 160 200 IPR000225 GO:0005515
Vium2527g00003 338 SMART arm_5 242 282 IPR000225 GO:0005515
Vium2527g00003 338 PANTHER U BOX DOMAIN-CONTAINING 47 327 - -
Vium2527g00003 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 88 131 IPR000225 GO:0005515
Vium2527g00003 338 Pfam Armadillo/beta-catenin-like repeat 162 195 IPR000225 GO:0005515
Vium2527g00003 338 Pfam Armadillo/beta-catenin-like repeat 120 159 IPR000225 GO:0005515
Vium2527g00003 338 Pfam Armadillo/beta-catenin-like repeat 78 117 IPR000225 GO:0005515
Vium2527g00003 338 Gene3D - 13 184 IPR011989 -
Vium2527g00003 338 Gene3D - 186 313 IPR011989 -
Vium2527g00003 338 FunFam U-box domain-containing protein 4 163 335 - -
Vium2527g00003 338 SUPERFAMILY ARM repeat 44 309 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2527g00003 Vium-Chr2527 16959 18546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2527g00003 26 337 U-box Gene Family AT2G23140 48.718 6.79e-79 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2527g00003 - - gmx:100797550 442.195